| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2920 |
|---|
| Symbol | |
|---|
| ID | 6160260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3223401 |
|---|
| End bp | 3224129 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641665699 |
|---|
| Product | ChaC family protein |
|---|
| Protein accession | YP_001791950 |
|---|
| Protein GI | 171059601 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3703] Uncharacterized protein involved in cation transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.508921 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCATGA CGTCCGATCA GGCCCTCCCC GACACCGCGA CACACATCGC GGCACACACG
ACGGCGCTCA CCGCCCTGCA CGCCGCGCAG GCACGCAGGC GCGCACTCGA CCAGGTGCGC
GAGCAGATGC GCGGACGCAG CGAGTTCTGG GTCTTCGCCT ACGCGTCGCT GATCTGGAAA
CCCGCGTTCG AACCGGCCGA GCAGCGCATC GCGCGGGTCT GGGGTCATCA CCGGGCGCTG
CAGATGCATT CACGGCTGGA TCGCGGCACG GCGCAGCGTC CGGGCCTGGT GTTCGCACTG
TTGCCGGGCG GTTCGTGCCA GGGTCTGGTG CAGCGGGTGC ACCGACCCGA CGATGACGCC
ACCCTCGAAC TGCTCTGGTC ACGCGAGATG GACACCGGCG TCTACCGCCC GCGCTGGCTG
AACTGCCAGA CCGCCCACGG CCCGGTGCAC GCGCTGTCGT TCACGCTGTC GCGCCGCAGC
CCGAGCCATG CCGGCGACCT GAGCGAGTCG CAACTGCTCG AGATCCTGCG CCACGCCCGC
GGCCGCTACG GTCGCACGCT CGATTACCTG CTGCACACCG CGCACGCCTT GCAGGCGCTG
GGCATCCGCG ACACCGACGT GCAGCGCCTG GTCGCGCTGG CGCAGCGCCA TCGGCTGCTC
GACGGCGACG CGCCGCATGC CCTCACGCCG TGGCGCCAGC CTCTGGCGCA GTCGGCAAGC
GCAGGTTGA
|
|---|
| Protein sequence | MPMTSDQALP DTATHIAAHT TALTALHAAQ ARRRALDQVR EQMRGRSEFW VFAYASLIWK
PAFEPAEQRI ARVWGHHRAL QMHSRLDRGT AQRPGLVFAL LPGGSCQGLV QRVHRPDDDA
TLELLWSREM DTGVYRPRWL NCQTAHGPVH ALSFTLSRRS PSHAGDLSES QLLEILRHAR
GRYGRTLDYL LHTAHALQAL GIRDTDVQRL VALAQRHRLL DGDAPHALTP WRQPLAQSAS
AG
|
|---|
| |