Gene Lcho_2881 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2881 
Symbol 
ID6159854 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3171493 
End bp3172920 
Gene Length1428 bp 
Protein Length475 aa 
Translation table11 
GC content67% 
IMG OID641665660 
Productdihydrolipoamide dehydrogenase 
Protein accessionYP_001791911 
Protein GI171059562 
COG category[C] Energy production and conversion 
COG ID[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 
TIGRFAM ID[TIGR01350] dihydrolipoamide dehydrogenase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.384259 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCAAAC AATTCGACGT CGTCGTGATC GGCGGCGGCC CCGGTGGCTA CATCGCTGCC 
ATCCGTGCAG CGCAGCTGGG TTTCAACGTC GCCTGCATCG ACGAGTGGAA GAACGACAAG
GGCGGCCCCG CTCCCGGCGG CACCTGCACC AACGTCGGCT GCATCCCGTC GAAGGCGCTG
CTGCAGTCGT CCGAGCACTA CGAACAGGCC GCCCACCACT TCGGTGACCA CGGCATCACG
CTCGACAACC TGAAGATGGA TGTCGCCAAG ATGGTGGGCC GCAAGGACAC CGTCGTGAAG
CAGAACAACG ACGGCATCCT GTATCTCTTC AAGAAGAACA AGATCAGCTT CTTCCACGGC
CGCGGCTCGT TCGCCAAGGC GGTCGAGGGC GGCTACGAGA TCAACGTCGC CGGCGCCGCC
GCCGAGACGC TGGTGGGCAA GCAGATCATC ATCGCCACCG GCTCCAATGC CCGTGCGCTG
CCGGGTGCCG CGTTCGACGA AGACAAGGTG CTGTCCAACG ACGGCGCGCT GCGCATCGGC
GCGGTGCCGG CCAAGCTGGG CGTGATCGGC TCGGGCGTGA TCGGCCTGGA AATGGGCTCG
GTCTGGCGTC GCCTGGGCGC TGAAGTGACC ATTCTCGAAG CGCTGCCCAA CTTCCTCGGC
GCCGCCGACG AAGGCGTGGC CAAGGAAGCG CTCAAGGCGT TCAAGAAGCA GGGCCTGAAG
TTCGAGTTCG GCGTCAAGAT CTCGGCCGTC GACACCAGTG GTGCCGGCGT CACCGTGGCC
TACACCGATG ACAAGGGCGC CGAGCAGACG CTGGCGGTCG ACAAGCTGAT CGTCTCGATC
GGCCGGGTCG CCAACACCAT CGGCCTGAAC CCCGAAGCGG TCGGCCTGGC GCTTGACGAG
CGCGGCGCGA TCGTGGTCGA CGGCGACTGC AAGACCAACC TGCCGGGCGT GTGGGCGGTC
GGTGACGTGG TGCGTGGCCC GATGCTCGCG CACAAGGCCG AGGAAGAAGG CGTGGCGGTG
GCCGAGCGCA TCGCCGGCCA GCACGGCCAT GTGAACTTCG CGACCATCCC GTGGGTGATC
TACACCTCGC CCGAGATCGC CTGGGTCGGC CGCACCGAGC AGCAGCTCAA GGCCGACGGC
GTGGCGTACA AGGCGGGCCA GTTCCCCTTC GTCGCCAACG GTCGCGCGCG TGCGCTGGGT
GACACCACGG GCTTCGTCAA GTTCCTGGCC GATGCCACGA CCGACGAGAT CCTGGGCGTG
CACATCGTCG GTCCGTTCGC TTCCGAACTG ATCTCCGAGG CCGTCGTGGC GATGGAGTTC
AAGGCCTCGG CCGAGGACAT CGCGCGCATC TGCCACGCGC ACCCGTCGCT GTCGGAGGCG
ACCAAGGAAG CCGCGCTGGC CGTCGACAAG CGCACGCTCA ACTTCTGA
 
Protein sequence
MSKQFDVVVI GGGPGGYIAA IRAAQLGFNV ACIDEWKNDK GGPAPGGTCT NVGCIPSKAL 
LQSSEHYEQA AHHFGDHGIT LDNLKMDVAK MVGRKDTVVK QNNDGILYLF KKNKISFFHG
RGSFAKAVEG GYEINVAGAA AETLVGKQII IATGSNARAL PGAAFDEDKV LSNDGALRIG
AVPAKLGVIG SGVIGLEMGS VWRRLGAEVT ILEALPNFLG AADEGVAKEA LKAFKKQGLK
FEFGVKISAV DTSGAGVTVA YTDDKGAEQT LAVDKLIVSI GRVANTIGLN PEAVGLALDE
RGAIVVDGDC KTNLPGVWAV GDVVRGPMLA HKAEEEGVAV AERIAGQHGH VNFATIPWVI
YTSPEIAWVG RTEQQLKADG VAYKAGQFPF VANGRARALG DTTGFVKFLA DATTDEILGV
HIVGPFASEL ISEAVVAMEF KASAEDIARI CHAHPSLSEA TKEAALAVDK RTLNF