| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2855 |
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| Symbol | |
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| ID | 6162607 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3142650 |
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| End bp | 3144851 |
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| Gene Length | 2202 bp |
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| Protein Length | 733 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641665633 |
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| Product | ribonuclease R |
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| Protein accession | YP_001791885 |
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| Protein GI | 171059536 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.180659 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAAA TCGAGGGCAC GGTGCAAGGC CACCGCGATG GGCACGGCTT CGTGATCCGA
GGTGGTGGCG AGCCCGACAT CTATCTGGCA CCCCAGGAGA TGAAGGCGGT TCTGCACCGC
GACCGGGTCA AGGTGCGCGT CATACGCCAG GATCGCAAGG GTCGACCGGA AGGCCGCGTG
CTCGAGATCC TCGAGCGCAA GCGCGCGCCG ATCATCGGCC GGCTGCTCAA CGAAAACGGC
ATGTGGGTGG TGGCACCGGA AGACAAGCGC TACGGTCAGG ACATCCTGAT TCCCAAGAAC
GCGTTGGCCA AGGCCGAAGT CGGGCAGGTG GTGGCCGTCG AACTGGTCGA GCCGCCCTCG
CTCTATGCCC AGCCCGTTGG CCGCATCACC GAGGTGCTGG GTGACATCGA CGACCCCGGC
ATGGAGATCG AGATCGCGGT GCGCAAGTAC GAGGTGCCGC ATCGTTTCTC GCCGGAGACG
CTGGCGCAGA CCGGCAAGCT GCCCGACCGC GTGCGGGCGG CCGACTGCAA GGGCCGCATC
GACCTGCGCG ATGTGCCGCT GGTCACGATC GACGGCGAAG ATGCCCGCGA CTTCGACGAC
GCGGTCTATT GCGAGCCGGC CAAGGTCGGT CGCACCAAGG GCTGGCGCCT GCTGGTGGCG
ATTGCCGACG TCAGCCATTA CGTCAAGCCC GGCGAGCCGC TCGATGACGA CGCCTACGAG
CGCGCGACCT CGGTCTACTT CCCGCGGCGC GTGATTCCCA TGCTGCCCGA GAAGCTGTCC
AACGGGCTGT GTTCGCTCAA CCCTGACGAA GAGCGGCTGT CGATGGTGTG CGACATGCTG
GTCAACGCCA GCGGCGAGGT GCACGCCTAC CAGTTCTATC CGGCGGTGAT CCTGTCGCAT
GCACGCTTCA CCTACACCGA GGTGGCGACC ATCCTGACCA ACACGCGCGG CCCCGAGGCG
CAGCGTCGTC ATGAACTGGT GCCTCATCTG GTGCACCTGC ACGAGATCTA TCGCGCCTTG
CTCAAGCAGC GCGCACTGCG CGGGGCGGTC GATTTCGAGA CCACCGAGAC CCAGATCGTC
TGCGACGACA ACGGCCGCAT CGAGAAGATC GTGCCGCGCA CCCGCACCGA GGCGCACCGC
CTGATCGAAG AGGCGATGCT GGCGGCCAAC GTCTGCGCGG CCGACTTCAT CCACGGCGGC
AAACATCCGT CGGTCTATCG CGTGCACGAG GGGCCGACGC CCGAAAAACG CACCACGCTG
CAGAACTACC TGCGCAGCAT GGGCCTCGGT TTCGTCCTGA GCGAAGAACC CAAGCCGGCG
GAGCTGCAGA TGATCGCGCA GCAGACGCGC GATCGGCCCG ACGTCGCGCA GATCCACCAG
ATGCTGCTGC GTTCGATGCA GCAGGCGATC TACACGCCGA CCAACAGCGG CCACTTCGGC
CTGGCCTACG ACGCCTACAC GCACTTCACC AGCCCGATCC GGCGCTATCC GGATCTGCTG
GTGCACCGGG TGATCAAGGC GCTGCTGCAC AACAAGCGCT ATCACCTGAC GCTGCCGCAA
GGCCATGCCG CGCCGGCCGA GACCCGGCGC GGCAAACCGG TGTCGGCCGC ACACCATGAA
AGTGCCGCCT GGGAAGCCGC CGGCGCGCAC TGCAGCGCCA ACGAGCGGCG TGCCGACGAG
GCCTCGCGCG ACGTCGAGGC CTGGCTCAAG TGCAAGTTCA TGCGCGATCG CCTCGGCGAG
GAGTACGCCG GCACGATCAG TTCCGTCACC AGCTTCGGGC TGTTCGTGCA GCTGGACGAG
CTCTACGTCG AGGGCCTGGT GCACATCACC GAACTCGGTG GCGAGTATTT CCGCTATGAC
GAGGCGCGCC AGGAAATGCG TGGCGAGCGC ACCGGCGTGC GTTACGTGGT GGGCGGGCGC
ATCCGGGTGC AGGTCAGTCG CGTCGATCTC GACGGCCGCA AGATCGATTT CCGGATGGTG
CGCGAAGGCG CCGCGCCGCA GCCGACGGCG CGAGCTCCGC GTGAACGCCA TGCCAATGCG
CAGGACGAGC TGGCGGCCAT CAAGGACGCC GATCGCCAGG TGCGCCGTGC CGGCCGCAAG
GAGGCCGGCG GCAAGTCGAC CGGCAAGCCG GCGACGCCAC GCAAGAGCGC CGCGGGTGCC
GAGGCGCGCA AGGCCAAGGC CAGGCGCAAC GGCCGCGGTT GA
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| Protein sequence | MSEIEGTVQG HRDGHGFVIR GGGEPDIYLA PQEMKAVLHR DRVKVRVIRQ DRKGRPEGRV
LEILERKRAP IIGRLLNENG MWVVAPEDKR YGQDILIPKN ALAKAEVGQV VAVELVEPPS
LYAQPVGRIT EVLGDIDDPG MEIEIAVRKY EVPHRFSPET LAQTGKLPDR VRAADCKGRI
DLRDVPLVTI DGEDARDFDD AVYCEPAKVG RTKGWRLLVA IADVSHYVKP GEPLDDDAYE
RATSVYFPRR VIPMLPEKLS NGLCSLNPDE ERLSMVCDML VNASGEVHAY QFYPAVILSH
ARFTYTEVAT ILTNTRGPEA QRRHELVPHL VHLHEIYRAL LKQRALRGAV DFETTETQIV
CDDNGRIEKI VPRTRTEAHR LIEEAMLAAN VCAADFIHGG KHPSVYRVHE GPTPEKRTTL
QNYLRSMGLG FVLSEEPKPA ELQMIAQQTR DRPDVAQIHQ MLLRSMQQAI YTPTNSGHFG
LAYDAYTHFT SPIRRYPDLL VHRVIKALLH NKRYHLTLPQ GHAAPAETRR GKPVSAAHHE
SAAWEAAGAH CSANERRADE ASRDVEAWLK CKFMRDRLGE EYAGTISSVT SFGLFVQLDE
LYVEGLVHIT ELGGEYFRYD EARQEMRGER TGVRYVVGGR IRVQVSRVDL DGRKIDFRMV
REGAAPQPTA RAPRERHANA QDELAAIKDA DRQVRRAGRK EAGGKSTGKP ATPRKSAAGA
EARKAKARRN GRG
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