Gene Lcho_2844 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2844 
Symbol 
ID6162661 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3131606 
End bp3132814 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content70% 
IMG OID641665622 
Product1-deoxy-D-xylulose 5-phosphate reductoisomerase 
Protein accessionYP_001791874 
Protein GI171059525 
COG category[I] Lipid transport and metabolism 
COG ID[COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase 
TIGRFAM ID[TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCTCG ATCACAAGCC CGCCGCGCGG CAACGCGTCT GCATCCTCGG CTCCACCGGC 
TCGATCGGCA CCAGCACGCT CGACGTGCTG TCGCGCCATC CCGACCGCTT CGAGGTGGTC
GCGCTGACCG CCCACAGCCG GGTCGACGAA CTGGCCGCGC AGTGCCTGCA ATGGCGCCCG
CGCTGGGCCG TGATGGCGAC CGCCGCGCAG GCTCTCGATC TCTCGCAGCG CCTGCGTGCA
GCCGGCTTGG GCACCGAGGT GCTGCACGGT GCCGACGCGC TGGTGCAGGT GGCCGGTCAC
GACCAGGTCG ACACCGTGAT GGCCGCCATC GTCGGTGCCG CCGGCCTGGC GCCGTGCCTG
GCCGCGGCGC GTGCCGGCAA GCGCCTGCTG CTGGCCAACA AGGAGGCCAT CGTGGTCGGC
GGCGCCCTGT TCATGCAGGC GGTGCGCGAG GGCGGTGCCA CGCTGCTGCC GATCGACAGC
GAACATTCGG CGATCTTCCA GTGCCTGCCC GAAGACCGTC GTACCTGGCC GCAGCGCATC
GACCACATCG TGCTGACCGC CTCGGGCGGA CCGTTCCGCA GCCGTGATCC GGCGACGCTG
GCCGAGGTCA CGCCCGAACA GGCATGCGCT CACCCGAACT GGGTGATGGG CCGCAAGATC
TCGGTCGATT CGGCCACGAT GATGAACAAG GCGCTCGAGG TCATCGAGGC GCGCTGGCTG
TTCGACCTGA CGCCGCGGCA GGTGCGGGTG GTGATCCATC CGCAGAGCAT CATCCACTCG
ATGGTGGTGT GCCGCGACGC CTCGGTGCTG GCGCAACTGG GCACGCCCGA CATGCGGGTG
CCGATCGCCT ACGGCCTGGC CTGGCCCGAG CGCATCGAGT CGGGCGCGTC GCAGCTCGAT
TTCCTCGGCC TTGCCAACCT GACCTTCGAG CCGGCCGACG CGCAGCGTTA TCCCGGCCTG
CAACTGGCCT GGCAGGCGCT CGAATCGCGT GAAGGCAGCA CCACGGTGCT CAACGCTGCC
AACGAGATCG CGGTGGATGC CTTCCTGAAC CGCCGGTTGC GCTTCGACCA GATCGCCCGC
CTGAATGCGA CCGTGCTCGA GCGCCTGGCC GTCCCGGCCG ACGCGGCTGC ATCGGTCGAG
GGTCTGCTGG CGCTCGACGG GCGTGCCCGG TCGCTCGCGG GCGAACTGAT CCGCACCGGA
AGAATCTGA
 
Protein sequence
MNLDHKPAAR QRVCILGSTG SIGTSTLDVL SRHPDRFEVV ALTAHSRVDE LAAQCLQWRP 
RWAVMATAAQ ALDLSQRLRA AGLGTEVLHG ADALVQVAGH DQVDTVMAAI VGAAGLAPCL
AAARAGKRLL LANKEAIVVG GALFMQAVRE GGATLLPIDS EHSAIFQCLP EDRRTWPQRI
DHIVLTASGG PFRSRDPATL AEVTPEQACA HPNWVMGRKI SVDSATMMNK ALEVIEARWL
FDLTPRQVRV VIHPQSIIHS MVVCRDASVL AQLGTPDMRV PIAYGLAWPE RIESGASQLD
FLGLANLTFE PADAQRYPGL QLAWQALESR EGSTTVLNAA NEIAVDAFLN RRLRFDQIAR
LNATVLERLA VPADAAASVE GLLALDGRAR SLAGELIRTG RI