| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2831 |
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| Symbol | |
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| ID | 6161585 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3116304 |
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| End bp | 3118415 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641665609 |
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| Product | Na+/solute symporter |
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| Protein accession | YP_001791861 |
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| Protein GI | 171059512 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4147] Predicted symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR03648] probable sodium:solute symporter, VC_2705 subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGAAC GTCGAGGCGG CCAGATCCGG CCGACCCAGG CCACGCGCGT CTTCACCCAT
GTGCTGCACC GGCGCTATGC CGCGTACACC GTGGGCGTGC TCTGCTTCAT CGTGTTGATG
GCGCTCCTCG AGCGCATGGG CTGGCCGCGC ACCTGGATCG GCGGCACCTT CCTGATCGGC
ACGGTGGCGG TCTATGCGGC GATCGGCCTG ATGTCGCGCA CCACCGACGA GTCCGAGTAC
TACGTCGCCG GGCGGCGCGT GCCTGCCATC TACAACGGCA TGGCCACGGC AGCCGACTGG
ATGTCGGCCG CGTCCTTCAT CGGCACTGCC GGCGTGCTGT ACCTGCAGGG CTTTGCGGGT
CTGGCCTACA TCCTCGGCTG GACCGGCGGT TACTGCCTGG TGGCGCTGCT GCTCGCGCCC
TATCTGCGCC GGGTCGGCTA CTTCACGGTT CCCGAGTTCC TCGGCGCCCG CTATGGCGGC
GTGCTGCCGC GCATCGTGGG CGTGGCTGCG GCCGTGCTGG TGTCGTTCGT CTACGTGGTG
GTGCAGATCT ACGGCGTGGG GCTGATCACG TCGCACCTGA CCGGTTTCAG TTTCGAGATC
GGCATCTTCG TCGGCCTGGG TGGCGTGCTG GTGTGCTCGT TCCTGGGCGG CATGCGGGCG
GTGACGTGGA CGCAGGTGGC GCAGTACATC GTGCTGATCC TGGCCTATCT GACGCCCGTG
TTCTGGCTCT CGATGAACCA GACCGGCAGT CCGTTCCCGC TCTTTTCATA CGGGCAGCAG
CTTCAGCAGG TGGGCCTGCG CGAACAGGCG CTGCTGCACG ATCCGCGTGA GCTGCAGGTG
CGCAACCAGC TGCAGGTGCG TGCCGACGAC GCCCGGCGCA AGCTGGCCGA CGTGCCGCAG
GCCATGATCG ACGACGCCGA AACCATGGCC GCCCAGGTGC GCGCGCTGCA GGCGGCCGAG
GCGCCGTTGG CGCGCATCCA GCAGGCCGAG CGCAAGCTGG CGACACGGCC TCACACGATC
GACGAGGCGC GGGTCGTCTA TCAGCGCGAA ATGGACCAGT CGGCCTTGCG GGCGTTGCCG
CTGGCAGGCA TGCCGCCGCA GGCCCAGCCC TATCCGGATT CGGGGGCGGC GAAAGCGGAT
CAAGCGCCCG GTGCGGCACG ACGGAATTTC CTGGCACTGG TGCTGTGCCT GATGCTGGGC
ACGGCCGCCA TGCCGCATGT GCTGACGCGC TACTACACCA CGCCGTCCGT CACCGAGACA
CGCAAGTCGG TGGCCTGGTC TCTGTTCTTC ATCGCGTTGC TCTACATGGC GGCACCGGCG
CTGGCCGCCA TGGTGAAGTA CGAGGTCTTC ACCAATCTGA TCGGCACGCC TTTCGATCAG
CTGCCCGGCT GGATCCGGCG CTGGTCCAAG CTGGATCCGT CGCTGGTATC GGTCGAGGAC
ATCAATGGCG ACGGCCTGCT GCAGCTGGCC GAGTTGCGCC TGGCCGGCGA CGTCATCGTG
CTGGCCGCCC CCGAGATCGG CGGCCTGCCG CTGGTGGTGA CCTACCTGGT CGCGGCGGGC
GGATTGGCCG CGGCGCTGTC GACCGCCGAC GGGCTGCTGC TGACGATCTC CAACGCCTTG
TCGCACGACC TGTATTTCGG CTTCGTCAAC CCGCGGGCGC CGGCGATGCG GCGCGTCATG
CTGTCGAAGT TCCTGGTACT GGTGATCGCC TTGCTGGCCG CGTTCATCGC GTCGATGCGG
TTTGCCGACA TCCTGCAGTT CGTGACGGCC GCGTTCTCGC TCGCGGCCGC GGGGTTCTTT
CCGGCCCTGG TGCTGGGCAT CTTCTGGCGG CGCGCCAACC GATCCGGGGC GACGCTGGGC
ATGCTCTCGG GGCTGGGTGT GTGCCTGTAC TACATGATCA CGACGCATCC GCGCTTGCGT
GATCTGTTCG GAATCGGCAT GCCGATCGAT CAGGCCCGCT GGTGGGATGT GGATCCGGCC
GCCGCCGGGG TCTTCGGCGT GCCGGTCGGC GCCGCCGTGA TGTTCGTGGC GAGTCTGCTG
ACGCCCGGCC CCGGACCGGC CGAACTGGCG ATGGTCGACC GCCTGCGCGA CCCGGGCCGA
GAGTCCGACT GA
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| Protein sequence | MAERRGGQIR PTQATRVFTH VLHRRYAAYT VGVLCFIVLM ALLERMGWPR TWIGGTFLIG
TVAVYAAIGL MSRTTDESEY YVAGRRVPAI YNGMATAADW MSAASFIGTA GVLYLQGFAG
LAYILGWTGG YCLVALLLAP YLRRVGYFTV PEFLGARYGG VLPRIVGVAA AVLVSFVYVV
VQIYGVGLIT SHLTGFSFEI GIFVGLGGVL VCSFLGGMRA VTWTQVAQYI VLILAYLTPV
FWLSMNQTGS PFPLFSYGQQ LQQVGLREQA LLHDPRELQV RNQLQVRADD ARRKLADVPQ
AMIDDAETMA AQVRALQAAE APLARIQQAE RKLATRPHTI DEARVVYQRE MDQSALRALP
LAGMPPQAQP YPDSGAAKAD QAPGAARRNF LALVLCLMLG TAAMPHVLTR YYTTPSVTET
RKSVAWSLFF IALLYMAAPA LAAMVKYEVF TNLIGTPFDQ LPGWIRRWSK LDPSLVSVED
INGDGLLQLA ELRLAGDVIV LAAPEIGGLP LVVTYLVAAG GLAAALSTAD GLLLTISNAL
SHDLYFGFVN PRAPAMRRVM LSKFLVLVIA LLAAFIASMR FADILQFVTA AFSLAAAGFF
PALVLGIFWR RANRSGATLG MLSGLGVCLY YMITTHPRLR DLFGIGMPID QARWWDVDPA
AAGVFGVPVG AAVMFVASLL TPGPGPAELA MVDRLRDPGR ESD
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