Gene Lcho_2825 details

Gene Information

• Locus tag: Lcho_2825
• ID: 6161632
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3112327
• End bp: 3113022
• Gene Length: 696 bp
• Protein Length: 231 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 641665603
• Product: hypothetical protein
• Protein accession: YP_001791855
• Protein GI: 171059506
• COG category: [R] General function prediction only
• COG ID: [COG0670] Integral membrane protein, interacts with FtsH

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 65
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAATCAAA GCCTGCACAC CTACACCGGC AACGCTGGCA CGGGAGCGCT GGGCCTGCAG 
CGCAACCGCG TGCTGCGCAA CACGTACGGG CTGCTCGCGC TGTCGATGCT GCCCACCGTC 
CTGGGCGCCT GGATCGGCGT CTCGACCGGC ATCATGGCCG CACTCGGAAC GGGCGCCTCG 
CTGGCGGTGT TCCTGATCGG CGCCTTCGGT TTCATGTTCG CGATCGAAAA GACCAAGGAA 
TCGGCGACCG GCGTGGCCGT GCTGCTGGCC TTCACGTTCT TCATGGGCCT GATGCTGTCG 
CGCATGCTGG CCGCAGTGCT GGGCTTCAAG AACGGCGGCT CGCTGATCAT GATGGCCTTC 
GGCGGCACCG CCGGCGTCTT CTTCGCGATG GCGACGCTCG CCACCGTGAT CAAGCGCGAC 
CTCAGCGGCA TGGGCAAGTT CCTGTTCGTC GGCGCGATCG TCCTGCTGGT GGCCGGCCTG 
ATCAACGTTT TCGTGCAGTC GACGGCGCTG ATGGCGACCC TGTCGGTGAT CGCGATCGGC 
CTGTTCTCGG CCTTCATGCT GTACGACATC AAGCGCGTGC TCGACGGCGG CGAAACCAAC 
TACATCAGTG CCACGCTGGC GATCTACCTG GACATCTACA ACGTGTTCCA GAGCCTGCTG 
GCCCTGCTGG GCATCTTCGG CGGCGAGCGC GACTGA 

 

Protein sequence

MNQSLHTYTG NAGTGALGLQ RNRVLRNTYG LLALSMLPTV LGAWIGVSTG IMAALGTGAS 
LAVFLIGAFG FMFAIEKTKE SATGVAVLLA FTFFMGLMLS RMLAAVLGFK NGGSLIMMAF 
GGTAGVFFAM ATLATVIKRD LSGMGKFLFV GAIVLLVAGL INVFVQSTAL MATLSVIAIG 
LFSAFMLYDI KRVLDGGETN YISATLAIYL DIYNVFQSLL ALLGIFGGER D