| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2822 |
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| Symbol | |
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| ID | 6161629 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3107075 |
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| End bp | 3110350 |
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| Gene Length | 3276 bp |
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| Protein Length | 1091 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641665600 |
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| Product | carbamoyl-phosphate synthase, large subunit |
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| Protein accession | YP_001791852 |
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| Protein GI | 171059503 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 66 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTAAGC GCGCTGACCT GAAATCCATC CTCATCATCG GCGCCGGCCC GATCATCATC
GGCCAGGCCT GCGAGTTCGA CTACTCCGGC GCGCAAGCCT GCAAGGCGCT GCGCGAAGAG
GGCTACAAGG TCATCCTGGT CAACTCGAAC CCGGCCACGA TCATGACCGA CCCGGCCACG
GCCGACGTCA CCTACATCGA GCCGATCACC TGGCAGGTGG TCGAGAAGAT CATCGCCAAG
GAGCGCCCGG ACGCGATCCT GCCGACCATG GGCGGCCAGA CGGCGCTCAA CTGCGCGCTC
GACCTGCACA AGAATGGCGT GCTCGACAAG TACAAGGTCG AGATGATCGG CGCCAACGAG
CACGCGATCG AGAAGGCCGA GGACCGCCTG AAGTTCAAGG ACGCGATGAC CTCGATCGGC
CTGGGCTCGG CCAAGTCGGG CATCGCGCAC TCGATGGAAG AAGCCTGGGC GGTGCAGAAG
GCGATCCAGG CCGACATCGG CGGCGCAGGC TTCCCGATGG TGATCCGCCC CAGCTTCACG
CTGGGCGGCA CCGGCGGCGG CATCGCCTAC AACCCCGAAG AGTTCGAGGA GATCTGCAAG
CGCGGCCTCG ACCTGTCGCC GACCAAGGAA CTGCTGATCG AGGAATCGCT GATCGGCTGG
AAAGAGTACG AGATGGAAGT GGTCCGCGAC AAGGCGGACA ACTGCATCAT CGTCTGCTCG
ATCGAGAACC TCGATCCGAT GGGCATCCAC ACCGGCGACT CGATCACCGT GGCGCCGGCG
CAGACGCTCA CCGACCGCGA ATACCAGCTG CTGCGCAACG CCTCGATCGC GATCCTGCGC
GAGATCGGCG TCGACACCGG CGGCTCGAAC GTGCAGTTCT CGATCAACCC GGTCGACGGC
CGCATGGTCG TCATCGAGAT GAACCCGCGC GTCTCGCGCT CGTCGGCGCT GGCCTCCAAG
GCCACGGGTT TTCCGATCGC CAAGATCGCC GCCAAGCTGG CCGTGGGCTA CACGCTCGAC
GAGCTGAAGA ACGACATCAC CGGCGGCGCC ACGCCGGCCT CGTTCGAGCC GTCGATCGAC
TACGTCGTCA CCAAGATCCC ACGTTTCGCG TTCGAGAAGT TCCCGGCTGC CGACTCGCAC
CTGACGACGC AGATGAAGTC GGTTGGCGAG GTGATGGCGA TGGGTCGCAC CTTCCAGGAA
TCGTTCCAGA AGGCGCTGCG CGGTCTGGAG ACCGGCATCG ACGGCCTCAG CGAGCGCTCC
ACCGATCGTG ACGAGATCAT CGAGGAGATC GGCGAGGCCG GCCCCGAGCG CATCCTCTAT
GTCGGCGACG CCTTCCGCAT CGGCCTGTCG CTCGACGAGA TCTTCGAGGA AACAGCGATC
GACCCGTGGT TCCTGGCCCA GATCGAGCAG CTGATCCAGA CCGAGACCGA GCTCAAGACC
CGGTTGCTCG CGAGCCTGAC GGCGACCGAA CTGCGTTTCC TGAAGAAGAA GGGTTTCTCG
GACCGCCGCC TGGCCAAGCT GATGGGCACC AACCAGCACG CCGTGCGCGA GGCGCGTCAT
GCGCTGGGCG TGCGGCCGGT CTACAAGCGG GTCGACACCT GCGCGGCCGA GTTCTCGACC
CAGACCGCCT ACCTCTACTC GTGTTACGAG AACGAGGACG GCGAGTGCGA GGCCGAACCC
ACCGCCAACA AGAAGATCAT GGTGCTGGGT GGTGGCCCGA ACCGCATCGG CCAGGGCATC
GAGTTCGACT ACTGCTGCGT GCACGCGGCG CTCGCCATGC GCGAGGATGG TTACGAAACC
ATCATGGTCA ACTGCAACCC GGAAACCGTC TCGACCGACT ACGACACCTC CGACCGCCTG
TACTTCGAGC CGGTGACGCT CGAAGACGTG CTCGAGATCG TCGACAAGGA AAAGCCGGTC
GGCGTGATCG TGCAGTACGG CGGCCAGACG CCGCTGAAGC TGGCGCTGGA TCTGGAGCGC
GCGGGCGTGC CGATCATCGG CACCTCGCCG GATTCGATCG ACGCGGCCGA GGACCGCGAG
CGCTTCCAGA AGCTGCTGCA CGAACTCGGC CTGAAGCAGC CGCCCAACCG CACCGCGCGC
ACCGAAGAAG CCGCGCTGGC GCTGGCGCAC GAGATCGGCT ATCCGCTGGT GGTGCGCCCG
AGCTACGTGC TGGGTGGCCG CGCGATGGAA ATCGTGCACG GCGACAAGGA CCTCGAGCGC
TACATGCGCG ACGCGGTGCG CGTGTCGGAG AAGTCGCCGG TGCTGCTGGA CCGTTTCCTC
GATGACGCGG TGGAGGTCGA TGTCGACTGC ATCAGCGACG GCGTCGACGT GATGATGGGC
GCCATCATGG AGCACATCGA GCAGGCCGGC GTGCACTCGG GCGACTCGGC CTGCTCGCTG
CCGCCGTACA CCCTGTCGAC CGTGCTGCAG GACGAATTGC GCCGCCAGAC CACGGTCATG
GCCAAGGGGC TGAAGGTGGT CGGCCTGATG AACGTGCAGT TCGCGATCCA GGGCGACGTC
ACGCAGGGGC TCGATGCCTG CACGGTGTAC GTGCTGGAAG TCAACCCGCG CGCGTCGCGC
ACGGTGCCCT TCGTGTCGAA GGCGACCGGC CAGCCGCTGG CCAAGATCGC CGCGCGCTGC
ATGGCCGGTC AGAAGCTGGC CGACCAGCGC GGTGTGGGCG GTCGTGCGCC GCACGAGGTC
ATTCCGCCTT ATTTCAGCGT CAAGGAAGCG GTTTTCCCGT TCAACAAGTT CCCGGGCGTG
GATCCGATCC TCGGCCCCGA AATGCGCTCG ACGGGCGAGG TGATGGGCGT GGGTCTGACG
TTCGGCGAGG CGATGCTCAA GAGCCAGCTG GGTGCCGGCT CGCGCCTGCC GACCAAGGGC
ACGGTGGTGA TCTCGGTCAA GAACAGCGAC AAGGCGCGGG CCGTCGGTGT CGCGCGCGAC
CTGCATCAGC TCGGCTACAC GATCGTGGCG ACCAAGGGGA CCGCGGCCGC GATCGCCCAG
GGCGGCGTGC CGGTCAAGGT GGTCAACAAG GTCAAGGACG GCCGGCCGCA CATCGCCGAC
ATGATCAAGG GCGGCGAGAT CCAGCTGGTG TTCACCACGG TCGATGAAAC CCGCACGGCG
ATCGCGGATT CGCGCCACAT CCGCACCGCG GCTCTGGCCA ACCGGGTGAC CTACTACACC
ACGATGGCCG GCTGCGAGGC GGCCACCGAG GCGCTCAAGC ATCAGGCCGG GTTGTCGGTG
GTCTCCCTGC AGGAACTGCA CGCGCAACTG AACTAA
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| Protein sequence | MPKRADLKSI LIIGAGPIII GQACEFDYSG AQACKALREE GYKVILVNSN PATIMTDPAT
ADVTYIEPIT WQVVEKIIAK ERPDAILPTM GGQTALNCAL DLHKNGVLDK YKVEMIGANE
HAIEKAEDRL KFKDAMTSIG LGSAKSGIAH SMEEAWAVQK AIQADIGGAG FPMVIRPSFT
LGGTGGGIAY NPEEFEEICK RGLDLSPTKE LLIEESLIGW KEYEMEVVRD KADNCIIVCS
IENLDPMGIH TGDSITVAPA QTLTDREYQL LRNASIAILR EIGVDTGGSN VQFSINPVDG
RMVVIEMNPR VSRSSALASK ATGFPIAKIA AKLAVGYTLD ELKNDITGGA TPASFEPSID
YVVTKIPRFA FEKFPAADSH LTTQMKSVGE VMAMGRTFQE SFQKALRGLE TGIDGLSERS
TDRDEIIEEI GEAGPERILY VGDAFRIGLS LDEIFEETAI DPWFLAQIEQ LIQTETELKT
RLLASLTATE LRFLKKKGFS DRRLAKLMGT NQHAVREARH ALGVRPVYKR VDTCAAEFST
QTAYLYSCYE NEDGECEAEP TANKKIMVLG GGPNRIGQGI EFDYCCVHAA LAMREDGYET
IMVNCNPETV STDYDTSDRL YFEPVTLEDV LEIVDKEKPV GVIVQYGGQT PLKLALDLER
AGVPIIGTSP DSIDAAEDRE RFQKLLHELG LKQPPNRTAR TEEAALALAH EIGYPLVVRP
SYVLGGRAME IVHGDKDLER YMRDAVRVSE KSPVLLDRFL DDAVEVDVDC ISDGVDVMMG
AIMEHIEQAG VHSGDSACSL PPYTLSTVLQ DELRRQTTVM AKGLKVVGLM NVQFAIQGDV
TQGLDACTVY VLEVNPRASR TVPFVSKATG QPLAKIAARC MAGQKLADQR GVGGRAPHEV
IPPYFSVKEA VFPFNKFPGV DPILGPEMRS TGEVMGVGLT FGEAMLKSQL GAGSRLPTKG
TVVISVKNSD KARAVGVARD LHQLGYTIVA TKGTAAAIAQ GGVPVKVVNK VKDGRPHIAD
MIKGGEIQLV FTTVDETRTA IADSRHIRTA ALANRVTYYT TMAGCEAATE ALKHQAGLSV
VSLQELHAQL N
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