Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2817 |
Symbol | |
ID | 6161658 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3102722 |
End bp | 3104626 |
Gene Length | 1905 bp |
Protein Length | 634 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641665595 |
Product | ATP-dependent metalloprotease FtsH |
Protein accession | YP_001791847 |
Protein GI | 171059498 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0465] ATP-dependent Zn proteases |
TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 64 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAACAATC AATGGTTCTC CAAAGTTGCA GTGTGGATGG TGATCGCCCT GGTGCTGTTC ACCGTGTTCA AGCAGTTCGA CCGCACGGCG ACCGCTGGTA ACCAGATCGG CTATTCGGAG TTTCTCGAGG AAGTGCGCGC CAAGCGCATT CGCGAGGTGG TGCTGCAGGA AAATCCTGGT GGTGCCGAGA TCGAAGCCCT GACCACCGAT GACAAGCGCA TTCGCACCAC GGCCACCTAC CTGGATCGTG GCCTCGTGGG CGACCTCATC GCCAACGGAG TCAAGTTCAA GGTCAAGCCG CGTGAAGAGC CGTCATTGCT GACGAGCCTG CTGATTTCCT GGGGGCCGAT GCTGCTGCTG ATCGGCGTAT GGGTCTACTT CATGCGCCAG ATGCAAGGCG GTGGCAAGGG CGGCGCTTTC AGCTTCGGCA AGAGCCGTGC GCGCATGCTC GACGAGAGCA ACAACTCCGT CACCTTCGCC GACGTTGCAG GTTGCGACGA GGCGAAAGAG GAAGTCAAGG AACTGGTCGA CTTCCTGAAG GACCCGCAAA AGTTCCAGAA GCTGGGCGGA CGAATTCCGC GTGGCGTCTT GATGGTCGGC CCGCCGGGTA CCGGTAAAAC GCTTCTGGCC AAGTCCATCG CGGGTGAAGC CAAGGTTCCG TTCTTTTCGA TCTCCGGCTC CGACTTCGTC GAGATGTTCG TGGGTGTCGG TGCTGCTCGC GTGCGGGACA TGTTCGAGCA GGCCAAGAAG AACGCGCCGT GCATCATCTT CATCGATGAA ATCGATGCTG TCGGTCGTCA TCGCGGTGCT GGTCTGGGGG GCGGCAACGA CGAGCGCGAG CAGACGCTCA ACCAGATGCT GGTCGAGATG GATGGTTTCG AGACCAACCT CGGCGTGATC GTGATTGCAG CGACCAACCG TCCGGACATC CTGGATCCTG CGCTGCTGCG TCCGGGCCGC TTTGACCGGC AGGTCTACGT GACCTTGCCC GACGTGCGTG GGCGCGAGCA GATCCTGAAC GTGCACATGC GCAAGATTCC GATGGGTCAG GACATTCGTG CCGACATCCT TGCGCGTGGC ACCCCCGGTT TCTCCGGTGC CGATCTTGCC AATCTGGTCA ACGAAGCAGC CCTGTTCGCT GCCCGCCGCA GCGCGCGGGT GGTCGAGATG GTCGACTTCG AGAAGGCCAA GGACAAGATC ATGATGGGCC CCGAGCGCAA GTCGATGGTC ATGCCCGAAG AGGAGCGCAA GAACACTGCG TACCACGAAT CCGGACACGC GCTGGTTGCC CGCCTGATGC CCAAGACCGA TCCGGTTCAC AAGGTGACGA TCATTCCGCG TGGCCGTGCT CTCGGTCTGA CCATGCAGCT GCCCGAAGGC GATCGCTACA GTCTTGACAA GGAGCGGATG CTGTCGACGA TTTCGGTGCT GTTCGGTGGG CGCATTGCCG AGGAGGTGTT CATGAACCAG ATGACCACCG GCGCCAGCAA CGACTTCGAA AGGGCCACGC AGATCGCGCG TGACATGGTG ACCCGTTACG GCATGACCGA AGAACTCGGT CCGATGGTCT ACGCTGAAAA CGAGGGCGAA GTGTTCCTGG GCCGCTCCAT CACCAAGCAG GTCAACGTTT CCGAAGAAAC GATGAAGAAG GTCGACAAGG AGATCCGCAA GATCATCGAT ACCCAGTATT CGCTGGCTCG TCAGTTGATC GAGGAGAACC AGGACAAGAT GCACACGATG GCGCGTGCAT TGCTCGACTG GGAGACCATC GACTCTGACC AGATCGAAGA CATCATGCAG GGTCGTCAAC CGCGTCCGCC GAAGGACTGG GTGCCGCCCG CATCGAAGCC CCCCGGTGGT CCGTCGAATC CGTCCGTGAG TCCAAATGCT GCGGCGACGG TCTGA
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Protein sequence | MNNQWFSKVA VWMVIALVLF TVFKQFDRTA TAGNQIGYSE FLEEVRAKRI REVVLQENPG GAEIEALTTD DKRIRTTATY LDRGLVGDLI ANGVKFKVKP REEPSLLTSL LISWGPMLLL IGVWVYFMRQ MQGGGKGGAF SFGKSRARML DESNNSVTFA DVAGCDEAKE EVKELVDFLK DPQKFQKLGG RIPRGVLMVG PPGTGKTLLA KSIAGEAKVP FFSISGSDFV EMFVGVGAAR VRDMFEQAKK NAPCIIFIDE IDAVGRHRGA GLGGGNDERE QTLNQMLVEM DGFETNLGVI VIAATNRPDI LDPALLRPGR FDRQVYVTLP DVRGREQILN VHMRKIPMGQ DIRADILARG TPGFSGADLA NLVNEAALFA ARRSARVVEM VDFEKAKDKI MMGPERKSMV MPEEERKNTA YHESGHALVA RLMPKTDPVH KVTIIPRGRA LGLTMQLPEG DRYSLDKERM LSTISVLFGG RIAEEVFMNQ MTTGASNDFE RATQIARDMV TRYGMTEELG PMVYAENEGE VFLGRSITKQ VNVSEETMKK VDKEIRKIID TQYSLARQLI EENQDKMHTM ARALLDWETI DSDQIEDIMQ GRQPRPPKDW VPPASKPPGG PSNPSVSPNA AATV
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