Gene Lcho_2800 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2800 
Symbol 
ID6161926 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp3084504 
End bp3085088 
Gene Length585 bp 
Protein Length194 aa 
Translation table11 
GC content71% 
IMG OID641665578 
Productnuclease 
Protein accessionYP_001791830 
Protein GI171059481 
COG category[L] Replication, recombination and repair 
COG ID[COG1525] Micrococcal nuclease (thermonuclease) homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.0144279 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAACGG GGATTCGAGT GCGCCGACGG GTTCGGTGGG CGCTCATCGG CGCGGGCTTG 
CTGGCGTGCC TGTCGGGCGC CTGTGCCTGG ACGGTGGTGG GCGAGGTGAC GCGGGTCAGC 
GACGGCGACA CCGTGACGCT GCTCGACCGC GAGCGCCGGC GCCACAAGAT CCGCCTGGCC 
GGCATCGATG CGCCGGAGCG GCAACAGGCC TGGGGCAAGG TGGCCGCAAG CGCCTTGCGC 
TTGGCGCTGC TGCGCCGCAC GGCATCGGCC GAGTGCGACA GCGTCGACCG CTACGGCCGC 
GCGGTCTGCA CGCTGACGCT CGATCAGCAG GACGTTTCCC TGGCCATGCT GAACGCCGGT 
CTGGCATGGC ATTACGTGGC CTACATCCGC GATCAGACAC GTGCCGAGGC ACGGCGTTAC 
GCGGCCGCCG AACAGGATGC ACGACAGGCT CGCCGCGGCC TCTGGGCCGA ACACGATCCG 
ACCCCGCCCT GGGAATGGCG GCGCGCCATG AAGGACCGGA CAAAGGCCCG CGCCGACAGC 
CAGGGCAGCA AGCCACGGCG CCAGGCGATC GAGTCGATGT TGTAG
 
Protein sequence
MQTGIRVRRR VRWALIGAGL LACLSGACAW TVVGEVTRVS DGDTVTLLDR ERRRHKIRLA 
GIDAPERQQA WGKVAASALR LALLRRTASA ECDSVDRYGR AVCTLTLDQQ DVSLAMLNAG 
LAWHYVAYIR DQTRAEARRY AAAEQDARQA RRGLWAEHDP TPPWEWRRAM KDRTKARADS 
QGSKPRRQAI ESML