| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2792 |
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| Symbol | |
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| ID | 6162198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3074516 |
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| End bp | 3076750 |
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| Gene Length | 2235 bp |
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| Protein Length | 744 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641665569 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001791822 |
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| Protein GI | 171059473 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0000123782 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGCGCGTGA GCAGCCGGTT CACCCTGCCC CCGCGCACCA ATGCACCGGC GGCCCTGCCC
GGCAGGCGGC TCAACAGCGC GTATCTGCCG TGGATCGGGC TGGCGCTGCT GGCGCTGCTG
CTGGCGCTGA GCGCCGCACT GGCCATCACC CAGCGCCAGC ACATCATCGA ATCCGAGCGC
AACAACGCGG CCTTGCTGGC GCGCATGCTC GAAGAGCAGG CCTCGCGCCA CCTCGATGCC
ACCGAGCTGG TGCTCGACAA CATCGGCGTC CAGGTCAAGC TCAGCACCGC CCAGCAGATG
GTGGCCCTGA ACCCGGCTCT GCTCGAAGCC AGCCGAGGCA CGCCGATGCT GCGCAGCCTC
TCGGTCGTCG ACGAGCGCGG CCTGATCCTG GCCAGCTCCG GCGCCGAAAA CCGGCGCGTG
CGCATCGACC TGGAAATGGT CGGCCGACCC CGCCAGCCCG GCCAGTCGCG CCTGGGAACC
TGGCTGGCGG GCCATGACCT GGTCCCGGCC GGCATCCCCA GCGATCGCCC GACCGCCAAC
GGCAGCGTGC CCGAGCCAAT CCAGCCCGGC GTGGGCCTGG TGGCCATGAC GCGCACGGCC
ACCAGTGCCG ACGGCCAGAC GCTCTACATG GTCGCGGCCC TGCACACCGG GTTCCTGGCC
GACCAGTTCG AGAGCACCCT CAAGGACAGC GGCCACAGCG CCACGCTGCT CAACTACCAG
GGCATGGTGG TGGCCACCAC CAGCCGACGG ATCGAGGCCG GCGACGTGGT GGCGATGCAC
CCCGATCTGC TCAACCAGCT GCCACGCGAG GACCATGGCA GCTTCGAAGG CGCCGGGCTC
GACGGCATCG ACGTGGTGGC GGCGTTTCGC GCCGTGCGCA TCCATCCGTG GGTGGTGCTG
GTCGAGCGGC CGGCCAGCGC GATCGTGGCC TCGTGGCGCA CCGACATGAC CTGGCTGGTC
CTGGCGACGC TGTTCCTGGG CGCGCTGATC GCGGCGGCCA CCGGCCTCGC CTGGCGCACC
CTGCGCACCC ACGAACAGCT CGAGGACGCA CTCGCCACCG CCAAGCAGCG ACTGGAAGAA
AACGAGCGGG CCCTGCGCAG CGTGATCGAG GCCGCGCCGG CGCCGATGTT CGTGCTCGAT
GCGCTCGGCC ACTACGCCAT GGTCAACCAC GCGTTCGAGG ATTTTCTCGG CATCCAGCGC
AGCGCGATCA TCGGCACCGG CCTGCCGCTG GCCACGCACC TGCAGCAACT CGCCTATCAC
CCGACGCACG ACGTCGCGAT CTGGCAGGGT GCCGGCCGCA GCCATTACCT CGACGACCTG
CCGGGCGCCG ACGGCCGCCT GCGCGAGGCG CTGGTCTCGA AGGTGGCAAT TGCGCGCGAA
GACGGCCGAC CACGCGCCGT GATCGGCAGC ATCACCGACG TCACCGAACT GCGCGAGGCC
GAACGCCACA CCCGCGAGGC GATGCAGATC GCCCAGCAGG CCAGCGAAAG CAAGAACGAG
TTCATCGCCA ACATGAGCCA CGGCCTGCGC ACACCGCTGC AATCGGTGCT GGGTTTTGCC
GAGCTCGGCA AATGGCGCAG CGCCGAACAG CGCCCCCTGC AAGAGATGTT CAGCGACATC
CACGCGGCCG GCAAGCGCAT GCTCTTGCTG GTCAACGACC TGCTCGACAT GTCGAAACTC
GAAAGCACCG TCGGCACGAT GCACTGCGAC CTCGCCGATG CGGTGAACCT GACGCGCGAA
CTGATCAACG AACTCCAGCC CCTGTGCACG GCGCGCGGCA TCACCGTGCG TCAGTTCGGC
CTGTTCGAGA CCGACGGCGA ATCCGGTGAA AGCGCCGTCT GGGTCGATCG CCTGCGGCTG
CAGCAGGCCC TGCGCAACGT GCTCGAAAAC GCCCTGCGCT TTTCGCCGGC CGGCTCGTCC
ATCGACATCG AGCTGATACG CAGCGCCGAC GGCTACCTGA ACTGGAACAT CCGCGACCGG
GGCCCGGGCA TCCCCGAAAG CGAGCGGCCG TATCTGTTCG AAGCGTTCTT CCATGGACAC
CGCAACCGCG ACGACGGCGG AGGCTTCGGC CTCGGGCTGG CCATCACGAG CAAGATCCTG
CATGCCCACG GCGGCAGCGC GTGGGCTGAA AACCACCCGG ACGGCGGCGC CGTCTTCCAC
CTGCGCATGC CGTCGGGCAC CGACATGTCG AAGTCGAAAC CCAGTTCGAG CAACCTCAAC
ATCTCGGCGG TCTGA
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| Protein sequence | MRVSSRFTLP PRTNAPAALP GRRLNSAYLP WIGLALLALL LALSAALAIT QRQHIIESER
NNAALLARML EEQASRHLDA TELVLDNIGV QVKLSTAQQM VALNPALLEA SRGTPMLRSL
SVVDERGLIL ASSGAENRRV RIDLEMVGRP RQPGQSRLGT WLAGHDLVPA GIPSDRPTAN
GSVPEPIQPG VGLVAMTRTA TSADGQTLYM VAALHTGFLA DQFESTLKDS GHSATLLNYQ
GMVVATTSRR IEAGDVVAMH PDLLNQLPRE DHGSFEGAGL DGIDVVAAFR AVRIHPWVVL
VERPASAIVA SWRTDMTWLV LATLFLGALI AAATGLAWRT LRTHEQLEDA LATAKQRLEE
NERALRSVIE AAPAPMFVLD ALGHYAMVNH AFEDFLGIQR SAIIGTGLPL ATHLQQLAYH
PTHDVAIWQG AGRSHYLDDL PGADGRLREA LVSKVAIARE DGRPRAVIGS ITDVTELREA
ERHTREAMQI AQQASESKNE FIANMSHGLR TPLQSVLGFA ELGKWRSAEQ RPLQEMFSDI
HAAGKRMLLL VNDLLDMSKL ESTVGTMHCD LADAVNLTRE LINELQPLCT ARGITVRQFG
LFETDGESGE SAVWVDRLRL QQALRNVLEN ALRFSPAGSS IDIELIRSAD GYLNWNIRDR
GPGIPESERP YLFEAFFHGH RNRDDGGGFG LGLAITSKIL HAHGGSAWAE NHPDGGAVFH
LRMPSGTDMS KSKPSSSNLN ISAV
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