Gene Lcho_2740 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2740 
Symboldcd 
ID6161816 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3019129 
End bp3019698 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content60% 
IMG OID641665517 
Productdeoxycytidine triphosphate deaminase 
Protein accessionYP_001791770 
Protein GI171059421 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0717] Deoxycytidine deaminase 
TIGRFAM ID[TIGR02274] deoxycytidine triphosphate deaminase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0000349431 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCATCA AGAGCGACAA GTGGATCCGC CGCATGGCGC AGGAATCCGG AATGATCGAG 
CCGTTCGAGC CCGGTCAGGT GCGCCAGTCG GCCGACGGCC AGAAGATCGT CAGCTACGGC 
ACCAGCAGTT ACGGCTACGA CATCCGCTGC GCACGTGAAT TCAAGGTCTT CACCAACATC 
TATTCGACGG TGGTGGACCC GAAGAACTTC GACGAGAAGA GTTTTGTCGA CATCGAGAGC 
GATGTCTGCA TCATCCCGCC CAACAGTTTC GCGCTGGCGC GCACGATGGA ATACTTTCGC 
ATCCCGCGCA ACGTGCTGAC CATCTGCCTG GGCAAGAGCA CCTATGCGCG CTGCGGGATC 
ATCGTCAACG TGACCCCTTT CGAGCCCGAA TGGGAGGGCT ACGTGACGCT GGAATTCAGC 
AACACCACGC CGCTGCCGGC CAAGATCTAC GCCGGTGAAG GCTGTGCGCA GGTGCTTTTC 
TTCGAGAGTG ACGAAGTCTG CGAAACCAGC TACCGCGACC GCGGCGGCAA GTACCAGGGC 
CAGACCGGCG TGACGCTGCC CAAGACCTGA
 
Protein sequence
MSIKSDKWIR RMAQESGMIE PFEPGQVRQS ADGQKIVSYG TSSYGYDIRC AREFKVFTNI 
YSTVVDPKNF DEKSFVDIES DVCIIPPNSF ALARTMEYFR IPRNVLTICL GKSTYARCGI 
IVNVTPFEPE WEGYVTLEFS NTTPLPAKIY AGEGCAQVLF FESDEVCETS YRDRGGKYQG 
QTGVTLPKT