| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2717 |
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| Symbol | |
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| ID | 6160894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2991560 |
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| End bp | 2993722 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641665494 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001791747 |
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| Protein GI | 171059398 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.00595541 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTACCTGC GTGATGAAGA ACCCGACCGC CAGCCCAGGA TCCTGCTGGT CGACGACGAC
GAGGTCACGC TGCTGTTGAC CTCGGCAGCC CTGCGTGAAC GCGGTTTTGC CGTCACCGAG
GCCACCGGCG GCCTGAGCGC GCTGCGCCTG CTGGGCGACT GGACGCCCGA CCTGATCGTG
CTCGACGCGA TGATGCCGGG GCTCGACGGC TTCGACACCT GCGTCGAGCT GCGCGGCCTG
CCGGGTTTCG AGCTGATGCC GGTGCTGATG CTGACCGGGC TCGACGACGA GGCCTCGATC
GAGCGCGCCT ACGAGGTCGG CGCGACCGAC TTCTTCGTCA AGAGCCATCA GTGGCGCCTG
CTGGCCGGGC GCCTGCGGCA CCTGCTGCGC ACCGCGCGCA TCCAGCTCGA GCTGCTGCGC
AGCCGCTCCA AGCTGGCGCG CGCGCAGGAC CTGGCGCGCA TGGGCAGTTT CGAGTGGCGC
GGCGATTCGG CCGGCCTGAT GCTCGAGCCC GAGGCGCTGC GCGTGCTCGG CCACGGCCCG
CACGATCACC TGGGCCTGCG CCGGCTGCTG CGCTCGCTGG TGGCCAACGA GCGCGCCGGT
GTCTGCAGCC GGCTGCGCGA GGTGGTGCGC CACAGCACGG TGCTCGACAC CGACGTGAAC
GTGGTGATGC CCGACCACCG CCAGCGCATC ATCCACATCG AGGCCGAGCC CGAGTTCAAC
GAGCACGGCA ACGTGGTCGG CTACGCCGGC ATCCTCCAGG ACGTGACCGA CCGGCGCCTG
ATCGAGGACA AGATCCGGCA CCTGGCCAAC TTCGACGCCC TGACCGGCCT GCCCAACCGC
CGCCAGCTGA TCTGGCGGGC CGAGCGGGCG CTCGAACATG CGCGCCGGCT GGGCCATCCG
TGTGCGCTGC TGCTGATCGA CCTGGACCGT TTCAAGGTCA TCAACGACAC CCTCGGCCAC
GGCGTCGGCG ACGAACTGCT GATGGAGATC GGCCGGCGCC TGCGCTCGTG CGTGCGCCAC
AGCGACCAGC TGGCCGACAT GTCGATCGAC GCCACCCTGC TGCGCTCGCA CCGCTCGCTC
GAGGCGGTGG CCCGGCTCGG CGGCGACGAG TTCGTGACCC TGCTGCCCGA GGTCGCCGAC
GAGCCGGAGG CACTGGAGAC GGCGCAGCGC ATCCTCGAAG CCATGCGGGC GCCGGTGGTG
CTGGGCGGTG CCGAGTATTT CGTCACCGCC AGCGTCGGCC TGGCGATGTT CCCGCGCGAC
GGCATCAGCG TGGTCGACCT GCTGCGCAAC GCCGACATGG CGATGTATGC GGTCAAGGAT
TCGGGGCGCA ACAACGTCAA GGTCTTCCAG CCGCAGATGT CGGGCAAGGG CCGCGAGAAG
CTCGAGCTCG AAAGCGCCCT GCACAAGGCC CTCGAACGCG GCGAGCTGGT GCTGCACTAC
CAGCCCAAGG TGGACGTGGC GCGCGGCCGG CTGGTCGGTG TCGAGGCCCT GATGCGCTGG
CATCGCAACG GCGAACTGGT GCCGCCGGGC GACTTCATCC CGCTGGCCGA GGAGACCGGG
CTGATCCTGC CGATCAGCGA GTGGGCGATG CGCGAGGCGA CGCGCCAGAT CCGCTCGTGG
CGCGACAGCG CCGGGCTCGA CCTGAAGGTG GCGGTCAACC TGCCCAGCCG CAGCTTCGAG
CGCGGCAACG TGCTCGACCA CATCCATGAA GCCGCGGCGG CGCACGACGT GCCGCTGAGT
TCGCTCGAAC TCGAGATCAC CGAGACCAGC CTGATGAAGG GCCTGGACGA GGTGATGCCG
ATGCTGCATC GCCTGACCCA GCACGGCGTG GGCATCTCGA TCGACGACTT CGGCACCGGC
TATTCGTCGC TTTCCTACCT CACCCAGCTG CCCATCAGCG AGCTCAAGAT CGACCGCTCG
TTCGTGCAGC GGCTCGACCG CACCGGCGGG TCGTCGGCGG TGGTCACCGC GATCATTGCG
CTGGCGCACA GCCTGAAGCT CAAGTTGGTG GCCGAAGGTG TCGAAAACGA GTACCAGCGC
GATGTCTTGT TGCGCCTGGG TTGCCACACG ATGCAGGGCT TCCTGTTCTC CCAGCCGCTG
CCGCCCGACG AGGTGGTGCG GTGGGTGACG GAGTTCCGTC GCAAGGCCGT GGCTCGGGTC
TGA
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| Protein sequence | MYLRDEEPDR QPRILLVDDD EVTLLLTSAA LRERGFAVTE ATGGLSALRL LGDWTPDLIV
LDAMMPGLDG FDTCVELRGL PGFELMPVLM LTGLDDEASI ERAYEVGATD FFVKSHQWRL
LAGRLRHLLR TARIQLELLR SRSKLARAQD LARMGSFEWR GDSAGLMLEP EALRVLGHGP
HDHLGLRRLL RSLVANERAG VCSRLREVVR HSTVLDTDVN VVMPDHRQRI IHIEAEPEFN
EHGNVVGYAG ILQDVTDRRL IEDKIRHLAN FDALTGLPNR RQLIWRAERA LEHARRLGHP
CALLLIDLDR FKVINDTLGH GVGDELLMEI GRRLRSCVRH SDQLADMSID ATLLRSHRSL
EAVARLGGDE FVTLLPEVAD EPEALETAQR ILEAMRAPVV LGGAEYFVTA SVGLAMFPRD
GISVVDLLRN ADMAMYAVKD SGRNNVKVFQ PQMSGKGREK LELESALHKA LERGELVLHY
QPKVDVARGR LVGVEALMRW HRNGELVPPG DFIPLAEETG LILPISEWAM REATRQIRSW
RDSAGLDLKV AVNLPSRSFE RGNVLDHIHE AAAAHDVPLS SLELEITETS LMKGLDEVMP
MLHRLTQHGV GISIDDFGTG YSSLSYLTQL PISELKIDRS FVQRLDRTGG SSAVVTAIIA
LAHSLKLKLV AEGVENEYQR DVLLRLGCHT MQGFLFSQPL PPDEVVRWVT EFRRKAVARV
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