| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2715 |
|---|
| Symbol | |
|---|
| ID | 6160892 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 2987983 |
|---|
| End bp | 2989377 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641665492 |
|---|
| Product | undecaprenyl-phosphate glucose phosphotransferase |
|---|
| Protein accession | YP_001791745 |
|---|
| Protein GI | 171059396 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2148] Sugar transferases involved in lipopolysaccharide synthesis |
|---|
| TIGRFAM ID | [TIGR03023] Undecaprenyl-phosphate glucose phosphotransferase
[TIGR03025] exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0190611 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACGCTC AACGCACGTC ACCCGGTTTC AACGCCTCGG CGCCCCAGTC GGTGCCGGTC
TTCGTTGCCG CCATCGCGGA GCCGCTGCTC GCCGTCTCGA CCTTCCTGGC CGTGACGGTG
CTGCATGACG AGCCGGTCAA CCGCGCCGTG ATGATCCTGT GCATCCTGAT GCTGGTGCTG
GTGTTTCCCG GCACCAACCG CTTCTACGAG CGGCCGCTCA ACTCCGCGGT CGACATCGTC
TCGGCCTGGG TGGTGGTGCT GCTGATCCTC GGCCTGTGCG GCTACGCCAC CGACAGCCTC
AAGTTCTTCG AGCCGTCGGT GCTGCTGTGG TGGGCCGCCA TCACGCCGCT GGCCCAGTTC
GCCTGCGTGA TGATCGGCCG CAGCCTGATG CGCAGTCACG CCGCGCAGCC CGAATCGCGC
CGACCCGCGC TGGTGATCGG TGCCGGCGCG CTGGGCGTCA AGGTGGCCCA GGCGCTCGGC
AGCCGGCACT CCTACGGACA TGATTTCATC GGCTACGTCG AGGATCGCCA GCCCGAGCGT
CGCCATCCGG AAGCCGCCGA CCGGGTGGTC GCACGCTTCG ACGAGATCGT CGACTGCATC
GCCCGCCACC GCATCAAGGA CGTCTACATC ACGCTGCCGC TGAGCTCGCA GCCGCGCATC
ATGCGCCTGC TCACGGCGCT GCAGGACACG GCGGTGTCGA TCTACTTCGT GCCCGACGTG
TTCGGTGTCA ACGTGATCCA GGGCCGCATG CGCAACATGG ACGGCGTGCC GATCGTCAGC
CTGCTCGAGA GCCCGTTCGT CGGCATCAAC GGCCTGGCCA AGCGCGCCAG CGACATCGTG
CTGGCCAGCC TGATCCTGCT GCTGGTGTCG CCGCTGTTCG TGGCGATCGC CATCGGCGTC
AAGCTCAGCT CGCCGGGGCC GGTGATCTTC AGGCAGCGCC GCAACGGCCT CGACGGCGAC
GAGATCGTGG TCTACAAGTT CCGCTCGATG CGCGCCATGG ACAACGGCCG GGTGGTGCGC
CAGGCCACCC GCGACGATCC GCGCATCACG CCCTTCGGCG CCTTCTTGCG CCGCACCTCG
CTCGACGAGC TGCCGCAGTT CATCAACGTG CTGCAGGGCC GCATGAGCAT CGTCGGCCCG
CGCCCGCATG CGGTGGCGCA CAACGACGAG TACCGGCCGA TCATCCGTTC GTACATGATC
CGCCACAAGG TCAAGCCCGG CATCACCGGC TGGGCCCAGG TCAACGGCTG CCGCGGCGAG
ACCGATGTGG TCGAGAAGAT GGCCGCCCGC GTCGAGTACG ACATCGCCTA TCTGCGCACC
TGGTCGATCG GCATGGATCT GCGCATCATC GCGCGCACGA TCAAGCTGGT TTTCTTCGAC
CGCAACGCGT TCTGA
|
|---|
| Protein sequence | MHAQRTSPGF NASAPQSVPV FVAAIAEPLL AVSTFLAVTV LHDEPVNRAV MILCILMLVL
VFPGTNRFYE RPLNSAVDIV SAWVVVLLIL GLCGYATDSL KFFEPSVLLW WAAITPLAQF
ACVMIGRSLM RSHAAQPESR RPALVIGAGA LGVKVAQALG SRHSYGHDFI GYVEDRQPER
RHPEAADRVV ARFDEIVDCI ARHRIKDVYI TLPLSSQPRI MRLLTALQDT AVSIYFVPDV
FGVNVIQGRM RNMDGVPIVS LLESPFVGIN GLAKRASDIV LASLILLLVS PLFVAIAIGV
KLSSPGPVIF RQRRNGLDGD EIVVYKFRSM RAMDNGRVVR QATRDDPRIT PFGAFLRRTS
LDELPQFINV LQGRMSIVGP RPHAVAHNDE YRPIIRSYMI RHKVKPGITG WAQVNGCRGE
TDVVEKMAAR VEYDIAYLRT WSIGMDLRII ARTIKLVFFD RNAF
|
|---|
| |