| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2711 |
|---|
| Symbol | |
|---|
| ID | 6162317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2981459 |
|---|
| End bp | 2984050 |
|---|
| Gene Length | 2592 bp |
|---|
| Protein Length | 863 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641665488 |
|---|
| Product | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase |
|---|
| Protein accession | YP_001791741 |
|---|
| Protein GI | 171059392 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1049] Aconitase B |
|---|
| TIGRFAM ID | [TIGR00117] aconitate hydratase 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0436703 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCAAG CCTATCGCCA ACACGTCGCC GAGCGCGCTG CCCTCGGCAT CCCGCCGCTG
CCGCTGGATG CCAAGCAGAC CGCCGACGTG ATCGAGCTGA TCAAGAACCC GCCCGCGGGC
GAGGACGCCT TCCTGCTCGA CCTGCTGACG CACCGCGTGC CCCCGGGCGT GGACGACGCC
GCCAAGGTCA AGGCCAGCTT CCTGGCTGCA GTGGCTCACG GTGAACTGGC CGTCGCGCTG
ATCGGCAAGG CCAAGGCCAC CGAACTGCTC GGCACCATGG TGGGCGGCTA CAACGTGCAC
CCGCTGATCG AACTGCTCGA CGACGCCGAA GTGGCCGCCG TCGCTGCCGC CGCGCTCAAG
AAGACGCTGC TGATGTTCGA CTTCTTCAAC GACGTCGCCG AGAAGGCCAA GGCCGGCAAC
GCCCACGCCA AGGACGTGAT CCAGAGCTGG GCCGAAGCCG AGTGGTTCAC CAGCCGCCCC
GAAGTGCCCC AGTCGATCAC CGTGACCGTC TTCAAGGTGC CCGGCGAGAC CAACACCGAC
GACCTGTCGC CCGCCCCCGA CGCCTGGAGC CGCCCGGACA TCCCGCTGCA CTACCTGGCG
ATGCTCAAGA ACACCCGCGA AGGCGCGGCG TTCAAGCCCG AGGAAGACGG CAAGCGCGGC
CCGATGCAGT TCATCGAGGA CCTGAAGAAG AAGGGCAACC TCGTGGCCTA CGTCGGCGAC
GTGGTCGGCA CCGGTTCCTC GCGCAAGTCG GCCACCAACT CGGTGATCTG GGCCACCGGC
CAGGACATCC CGTTCGTGCC GAACAAGCGC TTCGGCGGCG TCACGCTGGG CGGCAAGATC
GCCCCGATCT TCTTCAACAC GCAGGAAGAC TCCGGCTCGC TGCCGATCGA AGTCGACGTC
ACCAAGCTCG AAATGGGCGA CGTGGTCGAT GTGCGTCCGT ATGACGGCAA GATCGTCCGC
AACGGCGAGA CCGTCGTCGA GTTCAAGCTC AAGAGCGACG TGCTGTTCGA CGAAGTGCGC
GCCGGTGGCC GCATCAACCT GATCATCGGC CGCTCGCTGA CCGCCAAGGC GCGCGAGTTC
CTGGGCCTGC CCGCGTCCAC GCTGTTCCGC CTGCCCTCGA CCCCGACCGC CACCAACGCC
GGCTTCACGC TGGCGCAGAA GATGGTCGGC CGCGCCGTCG GTCTGCCCGA AGGCCAGGGC
GTGCGCCCGG GCACCTACTG CGAACCGAAG ATGACCACGG TCGGCTCGCA GGACACCACC
GGCCCGATGA CCCGCGACGA GCTGAAGGAC CTGGCTTGCC TGGGCTTCTC GGCCGACCTG
GTGATGCAGT CGTTCTGCCA CACCGCGGCC TACCCGAAGC CGGTCGACGT CAAGACCCAC
CGCGAACTGC CCGCGTTCAT CTCCAGCCGT GGCGGCGTCG CGCTGCGCCC GGGTGACGGC
GTGATCCACA GCTGGCTCAA CCGCCTGCTG CTGCCCGACA CCGTCGGCAC CGGTGGCGAC
TCGCACACCC GTTTCCCGAT CGGCATCTCC TTCCCCGCCG GTTCGGGCCT GGTCGCCTTC
GGCGCCGCCA CCGGCGTGAT GCCGCTGGAC ATGCCCGAAT CGGTGCTGGT GCGCTTCAAG
GGCCAGATGC AGCCCGGCAT CACCCTGCGC GATCTCGTGC ACGCCATTCC GCTGTACGCC
ATCAAGGCCG GTCTGCTGAC CGTCGCCAAG GCCGGCAAGA AGAACGTGTT CTCGGGCCGC
ATCCTCGAGA TCGAAGGTCT GCCCGACCTG AAGGTCGAAC AGGCTTTCGA GCTGAGCGAC
GCTTCGGCCG AACGCTCGGC CGCCGGTTGC ACCGTCAAGC TGAACCCGGC TCCGATCAAG
GAATACCTCA CCAGCAACAT CGTGCTGATG AAGAACATGA TCGCCGACGG TTACGCCGAC
GCCCGCACGC TGGCGCGCCG CATCGAGAAG GTCGAAGCCT GGCTCGCCAA CCCGAACCTG
CTCGAAGCCG ACAAGGACGC CGAATACGCG GCCGTGATCG AGATCGACCT GAACGAGCTG
ACCGAGCCGG TGCTGTGCTG CCCGAACGAC CCGGACGACG CCAAGCTGCT GAGCGAAGTG
GCCGGCGCCA AGATCGACGA GGTCTTCATC GGTTCGTGCA TGACCAACAT CGGTCACTTC
CGCGCGGCGT CCAAGCTGCT CGAAGGCAAG CGCGACATCC CGGTCAAGCT GTGGATCGCT
CCGCCGACCA AGATGGACGC GTCCGAGCTG ACCAAGGAAG GCCATTACGG CGTCTTCGGC
GCGGCCGGTG CGCGCACCGA GATGCCGGGC TGCTCGCTGT GCATGGGCAA CCAGGCGCAG
GTGCGTGAAG GCGCGACCGT GGTGTCCACC AGCACCCGCA ACTTCCCGAA CCGCCTGGGC
AAGAACACCT TCGTGTACCT GGCCTCGGCC GAGCTGGCTG CGATCGCATC GAAGCTGGGT
CGCATCCCGA CGGTGGCCGA ATACGCCGCC GACATGGGCG TGATCAACAA GGACAGCAGC
AAGATCTACA CGTACCTGAA CTTCGACCAG ATCGAAGAGT ACGCGGACAC CGCCAAGGGC
GTGTCGGCCT GA
|
|---|
| Protein sequence | MLQAYRQHVA ERAALGIPPL PLDAKQTADV IELIKNPPAG EDAFLLDLLT HRVPPGVDDA
AKVKASFLAA VAHGELAVAL IGKAKATELL GTMVGGYNVH PLIELLDDAE VAAVAAAALK
KTLLMFDFFN DVAEKAKAGN AHAKDVIQSW AEAEWFTSRP EVPQSITVTV FKVPGETNTD
DLSPAPDAWS RPDIPLHYLA MLKNTREGAA FKPEEDGKRG PMQFIEDLKK KGNLVAYVGD
VVGTGSSRKS ATNSVIWATG QDIPFVPNKR FGGVTLGGKI APIFFNTQED SGSLPIEVDV
TKLEMGDVVD VRPYDGKIVR NGETVVEFKL KSDVLFDEVR AGGRINLIIG RSLTAKAREF
LGLPASTLFR LPSTPTATNA GFTLAQKMVG RAVGLPEGQG VRPGTYCEPK MTTVGSQDTT
GPMTRDELKD LACLGFSADL VMQSFCHTAA YPKPVDVKTH RELPAFISSR GGVALRPGDG
VIHSWLNRLL LPDTVGTGGD SHTRFPIGIS FPAGSGLVAF GAATGVMPLD MPESVLVRFK
GQMQPGITLR DLVHAIPLYA IKAGLLTVAK AGKKNVFSGR ILEIEGLPDL KVEQAFELSD
ASAERSAAGC TVKLNPAPIK EYLTSNIVLM KNMIADGYAD ARTLARRIEK VEAWLANPNL
LEADKDAEYA AVIEIDLNEL TEPVLCCPND PDDAKLLSEV AGAKIDEVFI GSCMTNIGHF
RAASKLLEGK RDIPVKLWIA PPTKMDASEL TKEGHYGVFG AAGARTEMPG CSLCMGNQAQ
VREGATVVST STRNFPNRLG KNTFVYLASA ELAAIASKLG RIPTVAEYAA DMGVINKDSS
KIYTYLNFDQ IEEYADTAKG VSA
|
|---|
| |