| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2704 |
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| Symbol | |
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| ID | 6162324 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2974699 |
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| End bp | 2976507 |
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| Gene Length | 1809 bp |
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| Protein Length | 602 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641665481 |
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| Product | succinate dehydrogenase, flavoprotein subunit |
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| Protein accession | YP_001791734 |
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| Protein GI | 171059385 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.017234 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGTTG GTTCCAATCT GCCGCGTCGC AAGTTCGACG TGGTCATCGT CGGTGCGGGC
GGCTCGGGCA TGCGCGCATC GCTGCAACTG GCTCAGGCCG GCCTCAACGT GGCCGTGCTG
AGCAAGGTCT TCCCGACCCG TTCGCACACG GTGGCTGCCC AGGGCGGCAT CGGTGCGTCG
CTGGGCAACA TGTCGGAAGA CAACTGGCAC TACCACTTCT ACGACACCAT CAAGGGCTCC
GACTGGCTGG GCGACCAGGA CGCCATCGAG TTCATGTGCC GTGAAGCCGG CAAGGTGGTG
TACGAGCTCG AGCACTTCGG CATGCCGTTC GATCGCAATG CCGACGGCAC GATCTACCAG
CGTCCGTTCG GTGGTCACAC CGCCAACTAC GGCGAGAAGC CCGTGCAGCG CGCCTGCGCC
GCAGCCGACC GCACCGGTCA CGCGATGCTG CACACGCTGT ACCAGCAGAA CGTCAAGTCG
CGCACCCAGT TCTTCGTCGA ATGGATGGCG CTCGACCTCA TCCGCGACAG TGAAGGCGAC
GTGCTCGGCG TCACCGCCCT CGAGATGGAG ACCGGCGACG TCTACATCCT CGAAGCCAAG
ACCACGCTGT TTGCCACCGG TGGCGCCGGT CGCATCTTCG CGGCCAGCAC CAACGCCTTC
ATCAACACCG GCGACGGCCT GGGCATGGCG GCGCGCGCCA ACATCCCGCT GCAGGACATG
GAGTTCTGGC AGTTCCACCC GACCGGCGTG CACAACGCCG GCGTGCTGCT GACCGAAGGC
TGCCGTGGCG AAGGCGCGAT CCTGCGCAAC GTCAACGGCG AGCGTTTCAT GGAGCGCTAT
GCCCCGACGC TGAAGGACCT GGCGCCGCGC GACTTCGTCA GCCGCTGCAT GGACCAGGAA
ATCAAGGAAG GTCGCGGCTG CGGTCCCAAC AAGGACTACA TCAACCTCGA CATGACCCAC
CTGGGCGGCG ACACCATCCT CAAGCGCCTG CCCTCGGTGT TCGAGATCGG TCACAACTTC
GCCAACGTCG ACATCACCAA GGAATCGATC CCCGTGGTGC CGACCATCCA CTACCAGATG
GGTGGCATCC CGACCAACAT CAACGGTCAG GTGGTCGTGC CCAAGGGTGG CGATCACAAG
AGCGTGGTCA ACGGCCTGTA CGCGGTGGGC GAGTGCTCCT GCGTGTCGGT GCACGGCGCC
AACCGCCTGG GCACCAACTC GCTGCTCGAC CTGCTGGTGT TCGGTCGCGC GGCCGGCAAC
CACATCGTCG ACGCGCTCAA GAGCGCACCC AGGTCGCACA AGGATCTGCC CAAGGATGCG
GCCGACTTCT CGCTCGCCCG CCTGGCGCGC CTGGATGGCA GCGCCAAGGG CGAGTACGCG
CAGGACGTCG CCAACGACCT GCGCAGCACG ATGCAGCAGC ACGCCGGCGT GTTCCGCACC
CAGAAGTCGA TGAACGAGGG TGTGCTCAAG ATCAATGCGA TGCGCGAGCG CGTCAAGGCG
ATCACGCTCA AGGACAAGTC CAAGGTCTTC AACACCGCCC GCATCGAGGC GCTCGAAGTC
GACAACCTGA TCGAGGCTGC GCAGGCCACG ATGACCTCGG CTGCAGCCCG CACCGAATGC
CGTGGCGCAC ACACCGTGAA CGACTACGAG CGCGGTGCCG ACGACGCCGA GTTCCCGCTC
GGCCGCAACG ACAAGGAATG GATGAAGCAC ACCCTCTGGG ACAGCGCCAC CAACAGCCTG
TCGTACAAGC CGGTGAACCT GAAACCGCTG ACGGTGGAAT CCGTTCCGCC CAAGGTCCGC
ACCTTCTGA
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| Protein sequence | MAVGSNLPRR KFDVVIVGAG GSGMRASLQL AQAGLNVAVL SKVFPTRSHT VAAQGGIGAS
LGNMSEDNWH YHFYDTIKGS DWLGDQDAIE FMCREAGKVV YELEHFGMPF DRNADGTIYQ
RPFGGHTANY GEKPVQRACA AADRTGHAML HTLYQQNVKS RTQFFVEWMA LDLIRDSEGD
VLGVTALEME TGDVYILEAK TTLFATGGAG RIFAASTNAF INTGDGLGMA ARANIPLQDM
EFWQFHPTGV HNAGVLLTEG CRGEGAILRN VNGERFMERY APTLKDLAPR DFVSRCMDQE
IKEGRGCGPN KDYINLDMTH LGGDTILKRL PSVFEIGHNF ANVDITKESI PVVPTIHYQM
GGIPTNINGQ VVVPKGGDHK SVVNGLYAVG ECSCVSVHGA NRLGTNSLLD LLVFGRAAGN
HIVDALKSAP RSHKDLPKDA ADFSLARLAR LDGSAKGEYA QDVANDLRST MQQHAGVFRT
QKSMNEGVLK INAMRERVKA ITLKDKSKVF NTARIEALEV DNLIEAAQAT MTSAAARTEC
RGAHTVNDYE RGADDAEFPL GRNDKEWMKH TLWDSATNSL SYKPVNLKPL TVESVPPKVR
TF
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