Gene Lcho_2697 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2697 
Symbol 
ID6162375 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2967036 
End bp2969198 
Gene Length2163 bp 
Protein Length720 aa 
Translation table11 
GC content66% 
IMG OID641665474 
Productmethylmalonyl-CoA mutase 
Protein accessionYP_001791727 
Protein GI171059378 
COG category[I] Lipid transport and metabolism 
COG ID[COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) 
TIGRFAM ID[TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.20812 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTCAGT CCAAAGAATT TCAGTCCGCC ACGCTCGAAC AGTGGGCCAA GGCGGCTGCC 
AAGTCCGCTC CCGGCGGTGA TGTGTCGGCA CTGAACTGGC ACACGCCCGA GGGCATCGTC
GTCAAGCCGC TGTACACCGC GGCCGACACC GCCGACCTGC CCTATGCGGA CACGCTGCCG
GGCTTCGAGC CCTTCCTGCG CGGCCCGCAG GCCACGATGT ACGCGGTGCG GCCGTGGACC
ATCCGCCAGT ACGCCGGTTT CTCGACCGCC GAAGAATCGA ACGCCTTCTA CCGCAAGGCG
CTGGCTGCCG GCGGGCAGGG CGTGTCGGTC GCCTTCGACC TGGCCACGCA CCGCGGCTAT
GACAGCGATC ACCCGCGCGT GACCGGCGAC GTCGGCAAGG CCGGCGTGGC GATCGATTCG
GTCGAGGACA TGAAGATCCT GTTCGACCAG ATCCCGCTCG ACAAGGTGTC GGTCTCGATG
ACGATGAACG GTGCCGTGCT GCCGGTGCTG GCCGGCTACG TGGTGGCGGC CGAAGAGCAG
GGCGTGAGCC AGGACAAGTT GAGCGGCACG ATCCAGAACG ACATCCTCAA GGAGTTCATG
GTCCGCAACA CCTACATCTA CGGCCCCGAG CCGTCGATGC GGATCATCGG CGACATCATC
GAGTACACGG CGCAGAACAT GCCGAAGTTC AACTCGATCT CGATCTCCGG CTATCACATG
CAGGAAGCCG GCGCCAACCA GGCGCTCGAA CTCGCCTTCA CGCTCGCCGA CGGCAAGGAG
TACGTCAAGA CCGCCATCGC CAAGGGCATG GACGTCGACG ACTTCGCCGG GCGCCTCTCG
TTCTTCTGGG CGATCGGGAT GAACTTCTAT CTCGAGATCG CCAAGATGCG CGCGGCACGT
CTCTTGTGGA CCCGCATCAT GAAAGGCTTC GACGCCAAGA AGCCCAAGAG CCTGATGCTG
CGCACGCACT GCCAGACCAG CGGCTGGTCG CTGACCGAGC AGGATCCGTA CAACAACGTC
GTGCGCACCG CCATCGAGGC GATGGCCGCG GTCTTCGGCG GCACGCAGAG CCTGCACACC
AACGCCTTCG ACGAGGCCAT CGCGCTGCCC ACCGATACCA GCGCCCGCAT CGCCCGCAAC
ACCCAGCTGA TCATCCAGGA AGAGACCCAC ATCACCAGCG TGGTCGACCC CTGGGCCGGC
AGCTACATGA TGGAGAAGCT GACGCAGGAC ATGGCCGACA AGGCCTGGTC CATCATCGAG
GAAGTCGAGG CGATGGGCGG CATGACCAAG GCGGTCGATT CGGGTTGGGC CAAGCTCAAG
ATCGAAGCCA GTGCGGCCGA GAAGCAGGCC CGCATCGACT CGGGCCGCGA CGTCATCGTC
GGCGTCAACA AGTACAAGCT GGCCAAGGAA GACGCGGTCG AGATCCGCGA GGTCGACAAC
GTCGCCGTGC GGCTGTCGCA GATCGAGCGC CTGAAGGCCA TCAAGGCCGC ACGCGACACC
GCCGCCGTCA ACGCGGCCCT GCAGGCGCTG ACCGACGCGG CCGCCGCTGC CAACGGCAAC
CTGCTCGACC TGGCGATCAA AGCGATCCGC CTGCGCGCCA CGGTCGGCGA GGTCAGCGAT
GCGCTCGAGA AGGTGTTCGG CCGCCACCGC GCCGACATCC AGAAGGTCAC CGGCGTCTAC
GCCGCGGCCT ACGACTCGGC CGAAGGCTGG GAGAAGCTGC AGACCGAGAT CGCCGCCTTC
GCCGAGGAAC AGGGCCGCCG CCCGCGCGTG ATGATCGCCA AGCTCGGCCA GGACGGTCAC
GACCGTGGCG CCAAGGTGGT GGCCACGGCC TACGCCGACC TCGGCTTCGA CGTCGACATG
GGACCGCTGT TCCAGACCCC CGAAGAATGC GCGCGCCAGG CGATCGAGAA CGACGTGCAC
GCGGTGGGTG TCTCCACGCT CGCAGCCGGC CACAAGACGC TGGTGCCGGC CATCATCGCG
GCGCTGAAAG ATCAGGGCGC CGACGACATC ATCGTGTTCG TCGGCGGCGT GATCCCGGCG
CAGGACTACG GCTACCTGTA CGACGCCGGC GTGAAGGGCA TCTTCGGCCC CGGCACGCCG
ATTCCGGCGT CGGCCAAGAC GGTGCTCGAG CAGATCCGCG AGCGGTTCAG CGCAGCGGCC
TGA
 
Protein sequence
MSQSKEFQSA TLEQWAKAAA KSAPGGDVSA LNWHTPEGIV VKPLYTAADT ADLPYADTLP 
GFEPFLRGPQ ATMYAVRPWT IRQYAGFSTA EESNAFYRKA LAAGGQGVSV AFDLATHRGY
DSDHPRVTGD VGKAGVAIDS VEDMKILFDQ IPLDKVSVSM TMNGAVLPVL AGYVVAAEEQ
GVSQDKLSGT IQNDILKEFM VRNTYIYGPE PSMRIIGDII EYTAQNMPKF NSISISGYHM
QEAGANQALE LAFTLADGKE YVKTAIAKGM DVDDFAGRLS FFWAIGMNFY LEIAKMRAAR
LLWTRIMKGF DAKKPKSLML RTHCQTSGWS LTEQDPYNNV VRTAIEAMAA VFGGTQSLHT
NAFDEAIALP TDTSARIARN TQLIIQEETH ITSVVDPWAG SYMMEKLTQD MADKAWSIIE
EVEAMGGMTK AVDSGWAKLK IEASAAEKQA RIDSGRDVIV GVNKYKLAKE DAVEIREVDN
VAVRLSQIER LKAIKAARDT AAVNAALQAL TDAAAAANGN LLDLAIKAIR LRATVGEVSD
ALEKVFGRHR ADIQKVTGVY AAAYDSAEGW EKLQTEIAAF AEEQGRRPRV MIAKLGQDGH
DRGAKVVATA YADLGFDVDM GPLFQTPEEC ARQAIENDVH AVGVSTLAAG HKTLVPAIIA
ALKDQGADDI IVFVGGVIPA QDYGYLYDAG VKGIFGPGTP IPASAKTVLE QIRERFSAAA