Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2685 |
Symbol | |
ID | 6162666 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2953631 |
End bp | 2954365 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641665462 |
Product | ABC transporter-related protein |
Protein accession | YP_001791715 |
Protein GI | 171059366 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1126] ABC-type polar amino acid transport system, ATPase component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.480561 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGATCCAGA TCCAGAACAT CTCCAAGTGG TACGGCAGCT TCCAGGTGCT GACCGACTGC ACCACCTCGA TCCAGAAGGG CGAGGTCGTG GTGGTCTGCG GCCCGTCGGG CTCGGGCAAG AGCACGCTGA TCAAGACCGT CAACGCGCTC GAACCGATCC AGAAAGGCGA CATCGTCGTC AACGGCACCA GCATCACCGA CCCCAAGACC GACCTGCCCA AGCTGCGCAG CCACGTCGGC ATGGTGTTCC AGCACTTCGA GCTGTTCCCG CACCTGTCGG TGACCGAGAA CCTGACGATC GCGCAGGTCA AGGTGCTCGG GCGCAGCCAG GACGACGCCA TCGCGCGCGG CCTGAAGATG CTCGACCGCG TCGGGCTGAG CGCACACAAG GATAAGTTCC CCGGCCAGCT CTCGGGCGGC CAGCAGCAGC GCGTGGCGAT CGCGCGCGCG CTGAGCATGG ACCCGATCGT GATGCTGTTC GACGAGCCGA CCTCGGCGCT CGACCCCGAG ATGGTGGGCG AAGTGCTCGA CGTGATGGTC AAGCTGGCGC AGGAAGGCAT GACGATGATG GTGGTCACGC ACGAGATGGG CTTTGCCAAG AAGGTCAGCC ACCGGGTGAT CTTCATGGAC GCGGGCAAGA TCGTCGAGGA CTGCAGGAAG GACGAGTTCT TCGGCAATCC GGAGGCGAGG TCGCCGCGCG CCAAGGACTT CCTGTCGAAG ATCTTGCAGC ATTGA
|
Protein sequence | MIQIQNISKW YGSFQVLTDC TTSIQKGEVV VVCGPSGSGK STLIKTVNAL EPIQKGDIVV NGTSITDPKT DLPKLRSHVG MVFQHFELFP HLSVTENLTI AQVKVLGRSQ DDAIARGLKM LDRVGLSAHK DKFPGQLSGG QQQRVAIARA LSMDPIVMLF DEPTSALDPE MVGEVLDVMV KLAQEGMTMM VVTHEMGFAK KVSHRVIFMD AGKIVEDCRK DEFFGNPEAR SPRAKDFLSK ILQH
|
| |