Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2666 |
Symbol | |
ID | 6161842 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2925891 |
End bp | 2927807 |
Gene Length | 1917 bp |
Protein Length | 638 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641665442 |
Product | TonB-dependent receptor |
Protein accession | YP_001791696 |
Protein GI | 171059347 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTTCA ACCTCCAGGC GCGCCATGCG CCGTCGGCCC TGCGCGTCCT GTGCCTGGCT GCGATCTCGG CTGTCAGCGG CACCGCCGTC GCACGAGCTG CGCTCGATCC GGTGCTGATC ACCGGCACCC GTTTTGCAGA TGAAGCCGAC GCCCAGCCGA TCGGCATCAG CGTGATCACG GCCGAACAGA TCCGCCGCGG CGGCTACACC ACGATCAACG AGGCGGTGAT GCGCCAGCTC GGCGTGGCCG GCCGGCTCGA CCTCAACGGC GGTGGCGAAT ACGCGCTCGA CCTGCGCGGC TTCGGCAGCA CCTCCGACAA CAACATGGCG ATCGTGGTCG ACGGCATCCG CATCAGCGAG GGTGACCTCG GCGGCACCCG CCTGGCCGGC ATCCCGATCG AGACCGTCGA ACGCATCGAG GTGCTGCGCG GCAGCAGCGC CGTGCTTTAT GGCGAGGGCG CCACCGCCGG CGCGATCGTC ATCACCACCA AGGCCGGCCG CGGCGTGGCT CGCGCCGACC AGGCGCAGGT CTACGCTGCC GGTGGCACGC AGGGCCGGCG TGAACTGCGT GGCGCGGCCA CCGTCAATGC GGGCGATTTC AGCTTCGACC TCGCCGCCCA GCGCCGCCTG GCCGACAACC ACCGCGACAA CTTCGCGTCG GCGGTCAGCG GCGTCTCGCT GGCGGCTCAG TGGCAGCTCG ATCAGCTGCG GGTCGTGGCG CGCCATGCCG CCGACAGCCT CGCCACCGGC CTGCCCGGCG CCTTGAGCAC CGCGCAGTAC GCCGCCGACC CCAGCCAGGC GTCCAGCCTG ACCGACCATG GCCGCATCGA CGCCCGTCGC AGCACCCTCA CCGCCGAATA CAAGGGCGGC GACTGGGAGC TCGCGTTCGA CCTCGGCACG CGCCACAAGG AGCTGCGCAG CATCAACGGC GGCTTTCCTT TCGACTACGA CGTCGACGCC AGTACCGCCG GCGTGCGTGC CCGCCACGTC GGCCGCATCG CCAGCCTGCG CAACCAGCTC CGCTTCGGCA TCGACCATGC GCGCTGGGAG CGCGACGTGC TGCCGACGGG CTTGCCGGAC GTGCAGCGCA ACCGCGGCAT CTACGTCAAG GACGAGCTGA CCCTGGCCAA CGGCAGCAGC CTGTCGGCCG GCCTGCGGCG CGAGCAGGTC GACAAGGATG CCAACACCTT TGCCGGCCCG GCCAGCGTGT CCGACGGGAT CAACGCCTGG GAGATCGGCG CGGTCCACCC CGTCACCGCG CAGACCCAGG TCTATGCGCG CTGGGGCACC AGCTTCCGCC TGCCCAACGC CGACGAGCTC AGCAATGCCG GCCTGCGGCC GCAGACCTCG CGCGACCTGG AGCTCGGCAC GCGCTGGCGT GGCAGCGACA GCCGCTTCGA GGCCCGCATC TACCGCAGCC GCCTGAGCGA CGAGATCGGC TTCGACGGTG CGACGTTCCA GAACGTCAAC TTCGAACGCA CCCGTCGCGC CGGCCTGGAG TTCGAGGCCA GCCACGTGCT GAACGCCAGC GTCGACCTGC GCGCCGCCGG TGCGCTGCGC CGTTCGCGTT TCGACGCCGG GGCCAACGCC GGCCGCGACA TCCCGCTGGC GGCGCGCCGC AACGCCTCGG TCGGCGCCAG CTGGCAGTTC CTGCCGCAGC ATCACCTGGG CGCCGACCTG GTTTACACCG GCACCCAGTT CCCGACCGCT GCCAACAGCT GCCGCATGGA GGCCGCGACC ACGCTGGACT TGCGTTACGC GTGGCGGCTG CCCAAGCTGG AGCTGAGCCT GGCGATGGCC AACGCCGCCG ATCGCCAGTA CACCACGCAG GCCTTCGGCT GTGCGGCGGG CCAGGTCACG GCGATCTACC CCGAGCCCGG CCGCGCCGTG TTGGCCTCGG CCCGGATGTC GTTCTGA
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Protein sequence | MKFNLQARHA PSALRVLCLA AISAVSGTAV ARAALDPVLI TGTRFADEAD AQPIGISVIT AEQIRRGGYT TINEAVMRQL GVAGRLDLNG GGEYALDLRG FGSTSDNNMA IVVDGIRISE GDLGGTRLAG IPIETVERIE VLRGSSAVLY GEGATAGAIV ITTKAGRGVA RADQAQVYAA GGTQGRRELR GAATVNAGDF SFDLAAQRRL ADNHRDNFAS AVSGVSLAAQ WQLDQLRVVA RHAADSLATG LPGALSTAQY AADPSQASSL TDHGRIDARR STLTAEYKGG DWELAFDLGT RHKELRSING GFPFDYDVDA STAGVRARHV GRIASLRNQL RFGIDHARWE RDVLPTGLPD VQRNRGIYVK DELTLANGSS LSAGLRREQV DKDANTFAGP ASVSDGINAW EIGAVHPVTA QTQVYARWGT SFRLPNADEL SNAGLRPQTS RDLELGTRWR GSDSRFEARI YRSRLSDEIG FDGATFQNVN FERTRRAGLE FEASHVLNAS VDLRAAGALR RSRFDAGANA GRDIPLAARR NASVGASWQF LPQHHLGADL VYTGTQFPTA ANSCRMEAAT TLDLRYAWRL PKLELSLAMA NAADRQYTTQ AFGCAAGQVT AIYPEPGRAV LASARMSF
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