| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2656 |
|---|
| Symbol | |
|---|
| ID | 6162800 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 2917241 |
|---|
| End bp | 2918050 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641665432 |
|---|
| Product | periplasmic binding protein |
|---|
| Protein accession | YP_001791686 |
|---|
| Protein GI | 171059337 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACGC CCGACCTCTA CCCGCGCCGC ATCGTCTGCC TGACCGAAGA GACCACCGAG
ATCCTCTACC TGCTGGGCGA GCAGGACCGC ATCGTCGGCA TCTCGGGTTA CACCGTGCGC
CCGCCGCGGG CGCGGCAGGA AAAACCCAAG GTCAGCGCCT TTCTCTCCGC CAAGATCGAC
AAGATCCTGG CGCTCGAACC CGACCTGGTG CTGGGTTTCT CGGACCTGCA GGCCGACATC
GCCAGCCAGC TGATCCGCGC CGGCGTGCCG GTGCACGTGT TCAACCAGCG CGGCATCACC
ACCATCCTGC AGACCATCGC GATGGTCGGG GCGATGGTGG GCGCACATCA GCGCACCGCC
GCCTTGCTGG CCGAACTGCA GTCTGGGCTG GATGCGGTGG CCGCAGGCGC CGCCACGCTG
CCGCGCCGGC CGCGGGTCTA TTTCGAGGAG TGGATGGACC CGCTGATCAG CGGCATCGGC
TGGGTCAGCG AGCTGATCGT GCTGGCCGGT GGCGAGGAGT GTTTCCCCGA GCTGGCCGGC
CAGTCGCTGG GCAAGAACCG CATCATTGCC GACCCGCTGG AAGTGGTGCG GCGTGCGCCC
GACCTGATCC TGGGCTCGTG GTGCGGGCGC AAGTTCCGGC CCGACCAGGT CATCGCCCGG
CCGGGTTGGC AGGACGTGCC GGCGGTGCGC AACGGCCAGG TCTTCGAGAT CAAGTCGAGC
GAGATCCTGC AGCCCGGCCC GGCCGCGCTG ACCGACGGCG TGCGCCAGAT CGCCGCGCGC
ATCCAGGCCT GGGCAGCGCT GCAGGGCTGA
|
|---|
| Protein sequence | MATPDLYPRR IVCLTEETTE ILYLLGEQDR IVGISGYTVR PPRARQEKPK VSAFLSAKID
KILALEPDLV LGFSDLQADI ASQLIRAGVP VHVFNQRGIT TILQTIAMVG AMVGAHQRTA
ALLAELQSGL DAVAAGAATL PRRPRVYFEE WMDPLISGIG WVSELIVLAG GEECFPELAG
QSLGKNRIIA DPLEVVRRAP DLILGSWCGR KFRPDQVIAR PGWQDVPAVR NGQVFEIKSS
EILQPGPAAL TDGVRQIAAR IQAWAALQG
|
|---|
| |