| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2611 |
|---|
| Symbol | |
|---|
| ID | 6162771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2863039 |
|---|
| End bp | 2863794 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641665387 |
|---|
| Product | lytic transglycosylase catalytic |
|---|
| Protein accession | YP_001791641 |
|---|
| Protein GI | 171059292 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.59616 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGCGG GGTTGCTGAT GGCCACGGTG AGTCCGGTCT GCGCCCAGGT CTATGTCAGT
GAACCGACCG GCGATGTCGA CGCGCCGCTG GTGCTGTCGA ATTTCTCGAG CAGCGAAACG
CCGCACCTGA TCGTTGCGCC GGCCGCTGCG GTCGCGCCGC CCAGCCGGGC AGAAGCCGCC
TCCAGGCCAT CGATTCCTGC CACCGGCCCG ACGGCCCAGG CCGCCGTCGG TCGCATCCAT
GCCGCACCGG CCGTGCCGGC CAATCTGATG GCCGTGTTTG CGTCGGCGGC ACGCGAGCAC
GGCGTGCCGG CCAGCCTGCT GATGGCGGTG GCGGCGGCCG AATCCGGTTT CAATGCCCGC
GCCGTGTCGC CCAAGGGCGC CCTGGGCCTG ATGCAACTGA TGCCGCAGAC CGCACGCCAG
CACGGCGTGC GCGAAGTCTG GTCGGTGCTC GACAACGTGC GCGGCGGCGC CGCCCACCTG
CGGCAGCTGC TGACGCGATT CCCGGGCCGC CCGGCTCTGG CCTTGGCCGC CTACAACGCC
GGCGAACAGG CGGTCCTGAA GGCCGGTTCG CAGATTCCGC CCTTCGACGA AACACAACGC
TACGTGCCCA AGGTGCTGGC CTGGCAAACG CACTATCAGA AATTCGTCGA ACAGCCGATA
ACCCGTTCAT ACCCGCAGCG CAAGGCGATG CCACCTGTGG CTGAACGGCG GCTGGCGTCG
ACGCAGGGCA CACCCCGCAC AATCCGCCAG CCCTGA
|
|---|
| Protein sequence | MFAGLLMATV SPVCAQVYVS EPTGDVDAPL VLSNFSSSET PHLIVAPAAA VAPPSRAEAA
SRPSIPATGP TAQAAVGRIH AAPAVPANLM AVFASAAREH GVPASLLMAV AAAESGFNAR
AVSPKGALGL MQLMPQTARQ HGVREVWSVL DNVRGGAAHL RQLLTRFPGR PALALAAYNA
GEQAVLKAGS QIPPFDETQR YVPKVLAWQT HYQKFVEQPI TRSYPQRKAM PPVAERRLAS
TQGTPRTIRQ P
|
|---|
| |