| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2592 |
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| Symbol | |
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| ID | 6163560 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2838693 |
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| End bp | 2839889 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641665368 |
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| Product | extracellular ligand-binding receptor |
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| Protein accession | YP_001791622 |
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| Protein GI | 171059273 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.0214076 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGTT CACTATTTGC TCTCTCCTTG GTCAGCGTTG CCATGCTCGC CGCATGCGGC
AAGAAAGAAG AAGCTGCTGC GCCTCAGGCT GCGGCTGCCG CGTCTGTCGC TGCTGCTCCG
GCTGCGGCGG TGATCAAGAT CGGTCACGTT GCGCCCACCA GCGGTGCCAT CGCGCACCTG
GGCAAGGACA ATGAAAATGG CGCCCGCATG GCCATCGACG ATCTCAATGC CAAGGGCTTG
ACGATCGGCG GGGCAAAGGT CACTTTCGAG CTGCTCGCCG AAGACGATGG CGCCGATCCG
AAGCAAGGCA CCGCTGCAGC ACAGAAGCTG GTCGATTCCA AGGTCGCCGG TGTCATCGGC
CACCTGAACT CGGGCACCAC CATTCCGGCG TCCAAGCTCT ACAGCGACGC CGGCATCCCG
CAGATCTCGC CGTCGGCCAC CAATCCGGGC TACACCCGTC AAGGCTTCAA GACCACCTTC
CGCGTGGTCG CCGATGACGT GCATCTGGGT GGCACCCTCG GCAAATACGC CGTCACCGAA
CTGAAGGGCC AGAAGATCGC CGTGATCGAT GACCGCACGG CCTACGGCCA GGGCGTCGCC
GACGAGTTCG AGAAGGGCGT CGGCGGTGCT GGCGGCAAGA CCGTCGCGCG CGAGTTCACC
AACGACAAGG CCACGGACTT CACCTCCATC CTGACCAAGA TCAAGGCTGC GAAGCCTGAC
GTGATCTTCT TCGGCGGCAT GGACGCAGTG GCCGGTCCGA TGATCCGCCA GATGAAGCAG
CTGGGCATCA AGGCCAAGTT CATGGGCGGC GACGGCATCT GCACCGGCGA GCTGCCGAAG
CTGTCGGGTG GTGCCATGGC CGATTCGCAG GTCGTCTGCG CCGAGGCCGG TGGTGTCGAA
GGCGAGCAGA AGGTCGCGAT GGACGAGTTC AAGACCAAGT TCAAGGCCAA GTTCAACGCC
GACGTGCAGA TCTACGCACC GTACGTCTAC GACGCCACCA ACGTGATGGT CGAGGCCATG
GTCAAGGCCG ACTCGGCGGA TCCGGCCAAG TACCTGCCCG TGCTCGCACA GACGGCCGAC
TACAAGGGCG TGACCGGCAC CATCAGCTTC GACGAAAAGG GCGACATCAA GAACGGCGCC
CTGACCCTGT ACACCTACAA GGCCGGTGCA CGCGAGCAGA TCGCCGTGGT GCGCTGA
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| Protein sequence | MNRSLFALSL VSVAMLAACG KKEEAAAPQA AAAASVAAAP AAAVIKIGHV APTSGAIAHL
GKDNENGARM AIDDLNAKGL TIGGAKVTFE LLAEDDGADP KQGTAAAQKL VDSKVAGVIG
HLNSGTTIPA SKLYSDAGIP QISPSATNPG YTRQGFKTTF RVVADDVHLG GTLGKYAVTE
LKGQKIAVID DRTAYGQGVA DEFEKGVGGA GGKTVAREFT NDKATDFTSI LTKIKAAKPD
VIFFGGMDAV AGPMIRQMKQ LGIKAKFMGG DGICTGELPK LSGGAMADSQ VVCAEAGGVE
GEQKVAMDEF KTKFKAKFNA DVQIYAPYVY DATNVMVEAM VKADSADPAK YLPVLAQTAD
YKGVTGTISF DEKGDIKNGA LTLYTYKAGA REQIAVVR
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