Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2562 |
Symbol | |
ID | 6163162 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 2796202 |
End bp | 2798466 |
Gene Length | 2265 bp |
Protein Length | 754 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641665337 |
Product | RNA polymerase, sigma 70 subunit, RpoD |
Protein accession | YP_001791592 |
Protein GI | 171059243 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0018126 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCGCGA AGAAGAGCGC CCCCGCCACG TCCACCCTGA CCGACGACAA CCTGCCGGCC GCTGCTGCAC CCGAAGGCAA GACCGTGCGC GTCGTCCGGG TGGCCAAGGC TGCCAAGGCT GCAGCGCCCG GCGAAGAAAC GACCCCCACC GTTGCGGTCA AGCGCGGACG CAAGCCCAAG GCAGCCGCCG AGCCGGCCAA GAAGGCCGAG TCCAAGCCTG CGCTGGGGGG CGAGGAGGAT TTCGCCGACA TCGAAGCCGA ACTCGAAGGC GAGGTCGAAG TCGAGGCGGA GGGCGAAGTC GAGACGGTCG CGCTCGAAGG CACGGGTGAA GTCACGCCCA AGGCCAAGCC GCTGCGCATG AAGGTCAGCC GGGCCAAGGA ACGCGCGCTG ATGCGCGAGT TCGGCCTCGA CGAGACCATG CTGACCGAAG AGGAAGTCGC CAAGCGCCGC TCGGAGCTCA AGACCCTCAT CAAGATGGGC AAGACGCGCG GTTTCCTGAC GCATCAGGAA ATCAACGACC ACCTGCCCGA GAAGCTGGTC GAGGCCGAGA TCCTCGAAGC CATCGTGTCG ATGCTCAACG ACATGGGCAT CGCGGTCTAC GAGCAGGCGC CCGACGCGGC CACGCTGCTG ATCGCCGGCG GCGGCACCAC CACCTCGACC GAAGAAGAAG CCGAAGAAGC CGCCGAAGCC GCGCTGTCGA CGGTCGACTC CGAGTTCGGC CGCACGACCG ACCCGGTGCG CATGTACATG CGCGAGATGG GCACCGTCGA GCTGCTGACG CGTGAAGGCG AGATCGAGAT CGCCAAGCGC ATCGAAGGCG GTCTGCAGGC GATGATGCTG GCGATTTCGG CCTCGCCGGC CACCATCGCC GAAGTGCTGG AAATGGCCAA CAAGATCCGC GCCGGCACGG ACCCGATCTC GAGCGTGGTC GACGGCTTCG TGGCCGCCGA CGAGGCCGAC GACTACGTCG CCGAAGAAGA CTTCGACGAG TTCGACGAAG AAGAAGACGA CGACGGCAAC GGCGGCTCCA AGGCCCTGAC CAAGAAGCTC GAGGAGCTGA AGAACCAGGC GCTGGTGAAG TTCGACGCGC TGCAGCTCGA CTTCGACAAG ATGCGCAAGG CCTACGACAA GGACGGCTAC AAGTCGCCGG CCTACAACAA GGCGCAGGAA GCGATCAGCG GCCAGCTGAT GACGGTGCGC TTCACGGTCA AGACGATCGA GAAGCTGTGC GACCTGCTGC GCTCGCAGGT GGACGACATC CGGCGCTTCG AGCGCGAGCT GCGCAAGATC GTGGTCGACC GCTGCGGCAT GCCGCAGGAG TACTTCATCA AGAGCTTCCC GCCCAATATC CTGAACCTGG AGTGGGCCGA GAACGAGATC GCCGCCAACA AGCCCTACAG CGCCGTGATG AGCCGCAACC TGCCGGCCAT CCAGGAACTG CAGCAGAAGC TGACCGATCT GCAGACCAAG GCGGTGGTGC CGATCGACGA TCTCAAGCAG ATCAACCGGC GCATGAACGA GGGCGAAGCC AGTTCGCGCG AAGCCAAGCG CGAGATGATC GAGGCCAACC TGCGCCTCGT GATCTCCATC GCCAAGAAGT ACACCAACCG CGGCCTGCAG TTCCTCGACC TGATCCAGGA AGGCAACATC GGCCTGATGA AGGCGGTCGA CAAGTTCGAA TACCGCCGCG GCTACAAGTT CTCGACCTAC GCGACGTGGT GGATCCGTCA GGCCATCACC CGCTCGATCG CCGATCAGGC CCGCACCATC CGCATTCCGG TGCACATGAT CGAGACGATC AACAAGATGA ACCGTCTCTC GCGTCAGCAC TTGCAGGAGT TCGGTTTCGA GCCCGACGCG CCTTCTCTGG CCGAGAAGAT GGAGATGCCC GAGGACAAGA TCCGCAAGAT CATGAAGATC GCGAAAGAGC CGATCTCCAT GGAAACGCCG ATCGGCGACG ACGACGATTC GCATCTGGGC GACTTCATCG AGGACACCAA CAACACCGCG CCGATCGAGG CGGCGATGCA GTCGGGCCTG CGCGACGTGG TGCGCGACAT CCTCGACAGC CTGACGCCGC GCGAGGCCAA GGTGCTGCGC ATGCGCTTCG GCATCGAGAT GAGCACCGAC CACACGCTCG AAGAAGTCGG CAAGCAGTTC GACGTGACGC GCGAGCGCAT CCGCCAGATC GAGGCCAAGG CGATCCGCAA GCTCAAGCAC CCGAGCCGTT CGGACAAGCT GCGCACCTAT CTGGACAATC TGTAA
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Protein sequence | MTAKKSAPAT STLTDDNLPA AAAPEGKTVR VVRVAKAAKA AAPGEETTPT VAVKRGRKPK AAAEPAKKAE SKPALGGEED FADIEAELEG EVEVEAEGEV ETVALEGTGE VTPKAKPLRM KVSRAKERAL MREFGLDETM LTEEEVAKRR SELKTLIKMG KTRGFLTHQE INDHLPEKLV EAEILEAIVS MLNDMGIAVY EQAPDAATLL IAGGGTTTST EEEAEEAAEA ALSTVDSEFG RTTDPVRMYM REMGTVELLT REGEIEIAKR IEGGLQAMML AISASPATIA EVLEMANKIR AGTDPISSVV DGFVAADEAD DYVAEEDFDE FDEEEDDDGN GGSKALTKKL EELKNQALVK FDALQLDFDK MRKAYDKDGY KSPAYNKAQE AISGQLMTVR FTVKTIEKLC DLLRSQVDDI RRFERELRKI VVDRCGMPQE YFIKSFPPNI LNLEWAENEI AANKPYSAVM SRNLPAIQEL QQKLTDLQTK AVVPIDDLKQ INRRMNEGEA SSREAKREMI EANLRLVISI AKKYTNRGLQ FLDLIQEGNI GLMKAVDKFE YRRGYKFSTY ATWWIRQAIT RSIADQARTI RIPVHMIETI NKMNRLSRQH LQEFGFEPDA PSLAEKMEMP EDKIRKIMKI AKEPISMETP IGDDDDSHLG DFIEDTNNTA PIEAAMQSGL RDVVRDILDS LTPREAKVLR MRFGIEMSTD HTLEEVGKQF DVTRERIRQI EAKAIRKLKH PSRSDKLRTY LDNL
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