| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2549 |
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| Symbol | |
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| ID | 6163534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2782244 |
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| End bp | 2783080 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641665324 |
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| Product | squalene synthase HpnD |
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| Protein accession | YP_001791579 |
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| Protein GI | 171059230 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.00412385 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGCCGC AAAACTATGT GCAGGAGAAA GCCGCTGGCA GCGGCTCGAG CTTCTATTAC
GCCTTCCTGT TCCTGCCGCC GCCACGGCGC GCCGCGATCA CCGCGTTCTA CGCCTTCTGC
CGCGAGATCG ACGATGTCGT CGACGAGGTC AGCGACCCCG GCGTGGCCGC CACCAAGCTC
GCCTGGTGGC GCCAGGAAGT GGCCCGCGCC TTTGCCGGCA CGCCGCAGCA CCCGGCGATG
CAGGCGCTGA TGCCGCACGT GGCCGACTAC GACATCCGCG CCGAACACCT GCTGGCCGTG
ATCGACGGCT GCGAGATGGA CCTGCAGCAA AGCCGCTACC TCGACTACAC CGGCCTGCAG
CGCTACTGCC ACCTGGTGGC CGGCGTGGTC GGCGAGGTGG CGTCGGGCAT CTTCGGGCGC
ACCGAGGCGG CCACCGTCGG CTACGCGCAC CAGCTCGGGC TGGCGTTCCA GCTCACCAAC
ATCATCCGCG ACGTCGGTGA CGACGCACGG CGCGGGCGCA TCTACCTGCC GGTCAACGAG
CTCAAGCAGT TCGACGTCAA GGCGCAGGAG ATCCTGAACC GCACGTACAA CGAGCGCTTC
ACGGCACTGA TGCGCTTCCA GGCCGAGCGC GCCCACCGCT GCTACGACGA GGCCCTGGCG
CTGCTGCCCG AGTGCGACCG CGCCACCCAG AAACCCGGCC TGATGATGGC CAACATCTAC
CGCACGCTGC TGCGCGAGAT CGAGGCCGGC GGCTTCCAGG TGCTGCACCA GCGCATCTCG
CTGACGCCGG TGCGCAAGCT CTGGATCGCG ATGCAGACCA ACTGGCGTGG CCGCTGA
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| Protein sequence | MTPQNYVQEK AAGSGSSFYY AFLFLPPPRR AAITAFYAFC REIDDVVDEV SDPGVAATKL
AWWRQEVARA FAGTPQHPAM QALMPHVADY DIRAEHLLAV IDGCEMDLQQ SRYLDYTGLQ
RYCHLVAGVV GEVASGIFGR TEAATVGYAH QLGLAFQLTN IIRDVGDDAR RGRIYLPVNE
LKQFDVKAQE ILNRTYNERF TALMRFQAER AHRCYDEALA LLPECDRATQ KPGLMMANIY
RTLLREIEAG GFQVLHQRIS LTPVRKLWIA MQTNWRGR
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