Gene Lcho_2545 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2545 
Symboltig 
ID6162166 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2775259 
End bp2776566 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content66% 
IMG OID641665319 
Producttrigger factor 
Protein accessionYP_001791575 
Protein GI171059226 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0544] FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) 
TIGRFAM ID[TIGR00115] trigger factor 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.0171608 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGTTA CCGTGGAGAC CCTCGACAAG CTCGAGCGCC GCATCACCCT GACGCTGTCG 
GCCGATGAAC TCAAGAACGA GGTCGAGTCG CGCCTGAAGA AGCTGGCCCG CACCACCAAG
GCCGACGGCT TCCGCCCCGG CAAGGTGCCG ATGAGCGTCG TGGCCCAGCG CTACGGCTAT
TCGGTGCAGT ACGAGGTCAT GAACGACAAG GTCGGTCAGG CCTTCGCAGC GGCCACCGGC
GAGGCGCAGC TGCGCGTGGC CGGCACGCCG CGCATCACCG AGAAGGACGG CTCGGCCGAC
GGCCAGGTCA GTTTCGACGC CACCTTCGAG GTCTATCCCG AAGTGACGAT CGGCGACCTG
TCGGCGCTGG AAGTCGAGCG CGTCACGACC GAAGTCACCG ACGTCGCGAT CGACCGCACG
CTCGACATCC TGCGCAAGCA GCGTCGCACC TTCGCCGACC GTCCGCAGGG CGAGTACGCG
GTCGACGGTG ACCGCGTGAC GATCGACTTC GAAGGCAAGA TCGACGGCGA AACCTTCCAG
GGCGGCAAGG CCGAGGCCTT CCAGTTCATC CTGGGCGAGG GCCGCATGCT CGAAGCCTTC
GAGAAGGCCG TGCGCGGCAT GAAGACGGGC GAGTCGAAGA CCTTCCCGCT GGCCTTCCCG
GCCGATTACC ACGGCGCTGA CGTGGCCGGC AAGGAAGCCG ACTTCCTGGT CACGCTGACC
CGGATCGAAG CCCAGAATCT GCCTGAAGTC GACGCGGCCT TTGCCGAGTC GCTGGGCATC
GCCGACGCGA CTGTCGACGG CCTGCGTGCC GACATCAAGA AGAACCTCGA GCGCGAGGTC
AAGTTCCGCG TCGCCGCGCG CAACAAGCAG TCGGTCATGT CCGCCCTCGA GAAGGTCGCC
ACCTTCGACC TGCCCAAGGC GCTGGTCGAC AACGAGATGG CTCGCCTGGT CGAGAACGCC
CGTGCCGATC TGAAGCAGCG CGGCATTGCC GACGCCGACA AGGCACCGAT CCCGACCGAG
ATGTTCCAGC CGCAAGCCGA GCGCCGCGTG CGCCTGGGCC TGACGATGGC CGAGCTGGTG
CGTGCCAACG CGCTGTCGGC CACGATGGAG CAGATCAAGG CCCACATCGA CGAGATGGCG
CAGAGCTACG AGAAGCCCGA AGAGGTCGTG CGCTGGTACT TCGGTGACCA GCAGCGCCTG
TCCGAAGTCG AAGCCGTGGT GATCGAGGCC AATGTGGCCA ACTTCGTTCT CGGCCAGGCT
CAGGTCGTCG ACAAGCAGCT GCCTTTCGAC GAACTGATGG GCGCCTGA
 
Protein sequence
MAVTVETLDK LERRITLTLS ADELKNEVES RLKKLARTTK ADGFRPGKVP MSVVAQRYGY 
SVQYEVMNDK VGQAFAAATG EAQLRVAGTP RITEKDGSAD GQVSFDATFE VYPEVTIGDL
SALEVERVTT EVTDVAIDRT LDILRKQRRT FADRPQGEYA VDGDRVTIDF EGKIDGETFQ
GGKAEAFQFI LGEGRMLEAF EKAVRGMKTG ESKTFPLAFP ADYHGADVAG KEADFLVTLT
RIEAQNLPEV DAAFAESLGI ADATVDGLRA DIKKNLEREV KFRVAARNKQ SVMSALEKVA
TFDLPKALVD NEMARLVENA RADLKQRGIA DADKAPIPTE MFQPQAERRV RLGLTMAELV
RANALSATME QIKAHIDEMA QSYEKPEEVV RWYFGDQQRL SEVEAVVIEA NVANFVLGQA
QVVDKQLPFD ELMGA