| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2516 |
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| Symbol | dapD |
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| ID | 6161469 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2746932 |
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| End bp | 2747756 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641665286 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_001791546 |
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| Protein GI | 171059197 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0349984 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAGCC AACTCCAGCA AGTCATCGAG GCCGCGTGGG AAGACCGCGC CAACCTGTCC
GTCGCTTCCG CCCCGGCTGC CGTGCGTGAG GCCGTTGCCC ATGTGCTGGG CGAGCTCGAC
GCCGGCCGCA TCCGCGTGGC CGAGCGCCAG GCCGTGGGCC AGTGGCAGGT CAACCAGTGG
GTCAAGAAGG CGGTGCTGCT GAGCTTCCGC CTCAACGACA ACGTGGTGAT GGGCGACGGC
GCGCTGACCT TCTTCGACAA GGTGCCCAGC AAGTTCGGCG GCATGGACGA AGCCGCGCTG
CGCGCCACCG GCGTGCGCGT GGTGCCGCCG GCCGTGGCGC GGCGCGGCAG CTTCATCGCC
CGCGGCGCGA TCCTGATGCC GTCCTACGTC AACATCGGCG CCTACGTCGA CGAAGGCACG
ATGGTCGACA CCTGGGCCAC CGTCGGCAGC TGCGCGCAGA TCGGCAAGAA CGTGCACCTG
TCGGGCGGCG TCGGCATCGG CGGCGTGCTC GAGCCCCTGC AGGCCGGCCC GACCATCATC
GAGGACAACT GCTTCATCGG CGCGCGCTCG GAGGTGGTCG AAGGCGTGGT GGTCGAGGAG
AACTCGGTCA TCTCGATGGG CGTCTACATC GGCCAGAGCA CCAAGATCTA CGACCGCGCC
ACCGGCGAGG TGACGTACGG TCGCATCCCG TCGGGCTCGG TGGTGGTGAG CGGCAACCTG
CCGTCGGCCG ACGGCAAGTA CAGCCTGTAC TGCGCCGTGA TCGTCAAGCG CGTGGACGCC
CAGACCCGCG CCAAGACCAG CATCAACGAC CTGCTTCGTG GCTGA
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| Protein sequence | MSSQLQQVIE AAWEDRANLS VASAPAAVRE AVAHVLGELD AGRIRVAERQ AVGQWQVNQW
VKKAVLLSFR LNDNVVMGDG ALTFFDKVPS KFGGMDEAAL RATGVRVVPP AVARRGSFIA
RGAILMPSYV NIGAYVDEGT MVDTWATVGS CAQIGKNVHL SGGVGIGGVL EPLQAGPTII
EDNCFIGARS EVVEGVVVEE NSVISMGVYI GQSTKIYDRA TGEVTYGRIP SGSVVVSGNL
PSADGKYSLY CAVIVKRVDA QTRAKTSIND LLRG
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