Gene Lcho_2502 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2502 
Symbol 
ID6160681 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2724957 
End bp2727830 
Gene Length2874 bp 
Protein Length957 aa 
Translation table11 
GC content71% 
IMG OID641665272 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_001791532 
Protein GI171059183 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value2.17317e-06 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACGATCG ACAAGCGCCG CTTCGCTGCC CCGCTCACGC CGCTGGTGGC GCTTGCAATC 
CAGTGGAGCT TCTGGCCTTG GCTGCAGCCT TTCGCCTGGT TCCTGTTCTA TCCGGCGATC
TTCTTCGCGG CACGCCTGGG CGGGCGCATC GGCGCCTGGC TGGCCACGGC GCTGTCGGTG
GTGCTGGTGT GGACCGTCTT CATCGGTCCG TCACCGGGCG TCGGCAACCC CTCCGCCGTG
TTCTCGACGA TCGTCTTCGC CTTGATGGGG ATCCTGTTCG GAGAAGCGCA GGAGCAGCTG
ATGCGCGCCC TGCGAAAGGA TCGCCAGGCG CTCGACGGCA GCCAGGCCGA ACTGCAGCGC
CACCGCGATC ACCTGCAGGA ACTCGTCGAC GCGCGCACCG CCGAACTGGA GAAGGCGATG
CAGGCGCGCG GTGACGCCGA GGCGTTCGTG CGGGCGATCG CCGACAACCT GCCCGCGCGG
GTGAGCTTCT GGGACGTCGA CCTGCGCTGC CGCTTCGTCA ACCAGCGCTT CTGCCACGAC
GAGGGCCGCC CGCGCGAGGC GCTGATCGGC GCCTCGCTGA TCGATGTCTT CGGCGCCGGC
CGCATCGGCG AGGTCGAGGC CCGGCTGCGC ATGGCGATGC AAGGCCAGGC GCAGCATTTC
GAGCGCATCG TGCCAGGCCT CGACGGCACC ACCCGCACGC TGTGGGTCCA CCACATCCCG
GTGATCCGCG ACGGCCGCCT GCGCGGCGTC GTCGCTATGG GCACCGACAT CAGCGAGATC
AAGCGCGACG AGATCCGGCT GAGGCAGCTC AACACCGAAC TCGCCCAGGC CCGCGACCAT
GCCGAGGCCG CCAACCGCGC CAAGAGCACC TTCCTGGCCA ACATGAGCCA CGAGATCCGC
ACGCCGATGA ACGCCATCAT CGGCCTGACG CAACTGCTGC GGCGCACCCA CCGCGACCCC
GCCGGCGCCG AACAGCTCGC CAAGGTGGCC GACGCGGCCG ATCACCTGCT GCAGATCATC
AACGACGTGC TCGACCTGTC CAAGATCGAG TCCGGCAAGG TCGAGCTCGA GAGCATCGAC
ATCGACCTCG ACGAACTGCT CTCGCGCACG CTGTCGCTGG TCAGCAGCCG CGCGCACGAA
AAGGGGCTCG AGCTGGTGCT CGACACCGAC CACCTGCCGC GCACGCTGCG TGGCGATCCG
ACCCGGCTGT CGCAGGCGCT GCTGAACCTG CTGACCAACG CGATCAAGTT CACCGACCAC
GGCAGCGTGA TCCTGCGGGG CCAGAAACTG CAAGACGGCG CCGACGGCGT GCACGTGCGT
TTTTCGGTGC AGGACACCGG CATCGGCGTC GAGGCCGACC AGGTCGAGGC GCTGTTCCTG
GCCTTCGAAC AGGGCGACAG CTCGACCACC CGGCGCCACG GCGGCACCGG TCTCGGCCTG
GCGATCACGC GCCACCTGGC GCAGCTGATG GGCGGCGAAT CGGGCGCCGA CAGCGTGGCC
GGACAAGGCA GCACCTTCTG GTTCACGGCG CGGCTGGCGC ATGCGCGCAC GCTGCAGCCA
CCACGGCGTC CGACCGCCCT GCACGGCCTG CGCGTGCTGC TGGCCGACGA CCTCGAACCC
GCGCGCGAGG CGATGGCCGA GATGATGCGG TCGATCGGCC TGCGGGTCGA TGCGGTGGCG
TCGGGCGAAC AGGCGCTGGC CGCACTGCAG GACGTGTCGC CGGACCCTTA CCGCCTGGTG
CTGCTGGACT GGTGCATGCC CGGTCTGGAC GGCATCGAGA CCGCCCGCCG CATGGCGCAG
CTCGCGCTGC CGCAGCGCCC GCCGGTCGTG CTGGTCAGCG CGCAGGACGA CGACACCCTG
CCCGCCCTGG CGCGCACGGT CGGCATCGGC ACGGTGCTGC TCAAGCCGCT GACGGCGTCG
AGCCTGCATG ACGCCGTGAT CGGCCTGCTG CAGATCGACG CGCCACGGGC GGCGGCCACG
CCGCCGCAGG CCCTGCAGCA GCTCGAGCGC CAGTTGCGGC AGCGCCATGG TGGCGCCCCG
GTGCTGTTGG CCGAGGACAA CCCGATCAAC CAGGAGGTCG CCAGCTCGCT GCTGCAGCTG
GCCGGGCTGC AGGTCGACGT CGCCGACGAT GGCGCACAGG CGCTGGCGAT GGCCGAGACC
ACCGACTACC GCGCCATCCT GATGGACATG CAGATGCCGG TGATGGACGG CCTGCAGGCC
ACTCGGGCGA TCCGCGCACT GCCGCGCGCG GCCGGACTGC CGATCATCGC CATGACCGCC
AACGCCTTCG GCGAGGACCG GGCTGCCTGC CTGGCCGCGG GCATGAACGA CCACATCGCC
AAACCCGTCA ACGCGCAGGT GCTGTACGCC ACCCTGCTGC GCTGGCTCGA CGCCCATCCG
CCGCCACTCG AGACGCCCAT GACCCCGGAA AAACCAGCCG ACCGCGACGC GACACCCGGT
TCGGGTTTCG CAGCCATCGA GGGCCTGAAC ATCCAGACCG GCCTGCGCCA GATGGGCGGG
CGCATGAGCA CCTACGTGCG CATCATCCGC CGCTTCACCG AGCTGTACGG ACGCGGCATC
GCCGGCCTGA ACCAGGCCCT GCTCGACGGC GACGGCGCGG CAGCCCGCAA CGCCGTGCAT
GCCTTCAAGG GCGCCAGCGG CACCATCGGC GCGACGTCGC TGGCCGAACA GGCCAGCGCG
CTCGAGCACG ACATCCTGGC GCGCCGGCCG ACCTCCGAGC TGGTCGAGGC CGTCGAGCAC
CTGCAGCAGG ATCTGGCCCG GATGGTCGAG GCACTCGACC AGGCGCTGCC GGCCGAGTCC
GAGGCGGTGG CCGCCCACGG GGCCGCCGCT AGGCCAGCAG GCGGCGCAGC TTGA
 
Protein sequence
MTIDKRRFAA PLTPLVALAI QWSFWPWLQP FAWFLFYPAI FFAARLGGRI GAWLATALSV 
VLVWTVFIGP SPGVGNPSAV FSTIVFALMG ILFGEAQEQL MRALRKDRQA LDGSQAELQR
HRDHLQELVD ARTAELEKAM QARGDAEAFV RAIADNLPAR VSFWDVDLRC RFVNQRFCHD
EGRPREALIG ASLIDVFGAG RIGEVEARLR MAMQGQAQHF ERIVPGLDGT TRTLWVHHIP
VIRDGRLRGV VAMGTDISEI KRDEIRLRQL NTELAQARDH AEAANRAKST FLANMSHEIR
TPMNAIIGLT QLLRRTHRDP AGAEQLAKVA DAADHLLQII NDVLDLSKIE SGKVELESID
IDLDELLSRT LSLVSSRAHE KGLELVLDTD HLPRTLRGDP TRLSQALLNL LTNAIKFTDH
GSVILRGQKL QDGADGVHVR FSVQDTGIGV EADQVEALFL AFEQGDSSTT RRHGGTGLGL
AITRHLAQLM GGESGADSVA GQGSTFWFTA RLAHARTLQP PRRPTALHGL RVLLADDLEP
AREAMAEMMR SIGLRVDAVA SGEQALAALQ DVSPDPYRLV LLDWCMPGLD GIETARRMAQ
LALPQRPPVV LVSAQDDDTL PALARTVGIG TVLLKPLTAS SLHDAVIGLL QIDAPRAAAT
PPQALQQLER QLRQRHGGAP VLLAEDNPIN QEVASSLLQL AGLQVDVADD GAQALAMAET
TDYRAILMDM QMPVMDGLQA TRAIRALPRA AGLPIIAMTA NAFGEDRAAC LAAGMNDHIA
KPVNAQVLYA TLLRWLDAHP PPLETPMTPE KPADRDATPG SGFAAIEGLN IQTGLRQMGG
RMSTYVRIIR RFTELYGRGI AGLNQALLDG DGAAARNAVH AFKGASGTIG ATSLAEQASA
LEHDILARRP TSELVEAVEH LQQDLARMVE ALDQALPAES EAVAAHGAAA RPAGGAA