Gene Lcho_2487 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2487 
Symbol 
ID6160649 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp2709913 
End bp2710899 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content71% 
IMG OID641665257 
ProductGTP-binding protein HSR1-related 
Protein accessionYP_001791517 
Protein GI171059168 
COG category[R] General function prediction only 
COG ID[COG1161] Predicted GTPases 
TIGRFAM ID[TIGR03596] ribosome biogenesis GTP-binding protein YlqF 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones6 
Fosmid unclonability p-value0.000000000110563 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCCCATCC AGTGGTTTCC GGGTCACATG AACTCGACCA AGAAAGCCAT CGCCGAGCGA 
CTGCCGGAAA TCGACGTGGT GATCGAGCTG CTCGACGCGC GCCTGCCCGG CTCGAGCGCC 
AACCCGCTGC TGGCCGACCT GACACGCGGC AAGCCGGCGC TCAAGGTGCT CAACAAGCAG 
GACCTGGCCG ACCCGGCGCG CACCGCGCTG TGGCTGGCCC ATTACCAGGC GCGGCCCGGC 
ACGAACGCGA TCGGCCTCGA TGCCAGCGTC ACCGCGCCGG CCCGCCAGCT GATCGCGGCC 
TGCCGTGAGC TCGCACCGCT GCGCGGCGGC ATGGTCAAGC CGGTGCGGGT GCTGATCTGC 
GGCATCCCGA ACGTGGGCAA GTCGACGCTG ATCAACACCC TGCTCGGCCA GCGCTCGGCC 
AAGACCGGTG ACGAGCCCGG CATCACCAAG GTCGAACAGC GCCTCACGCT GGCGAGCGAT 
TTCTACCTGT ACGACACGCC CGGCATGCTG TGGCCGCGCA TCACGGTCGA GCAGAGCGGC 
TACCACCTCG CGGCCAGCGG CGGCATCGGC CGCAATGCCT ACGACGAGGA AGAAGTGGCG 
CTCGACCTGC TGGCCCGCGT GCGCCCGCAC TACGCCGATC GGCTGCAGGC GCGCTACAAG 
CTGGCCGACC TGGCGGGCCT GAGCGACGAG GCCCTGCTGG CCGACATCGG CCGCAAGCGC 
GGCGGCCTGA TGGCCGGCGG CAAGGTCAAC CTGCAGAAGG CCGCCGAGGT CGTCATCACC 
GACTTCCGCA CCGGCACCTG GGGCCGCATC ACGCTGGAGA CGCCCGACGA GTTCATGCAG 
TGGCAGGCGG CCGGCCAGGT GCTCGATGCC CAGCGGCAGG CCCGGCGCGA TGCGCGCAAC 
CAGAAGAAGA TCCCGCAGCG CGACGCAGCA GCAGCAGCCG CGGCGGCGGC GATGAGTACC 
GACGCCGCGG ACGCGCAACC GGACTGA
 
Protein sequence
MPIQWFPGHM NSTKKAIAER LPEIDVVIEL LDARLPGSSA NPLLADLTRG KPALKVLNKQ 
DLADPARTAL WLAHYQARPG TNAIGLDASV TAPARQLIAA CRELAPLRGG MVKPVRVLIC 
GIPNVGKSTL INTLLGQRSA KTGDEPGITK VEQRLTLASD FYLYDTPGML WPRITVEQSG 
YHLAASGGIG RNAYDEEEVA LDLLARVRPH YADRLQARYK LADLAGLSDE ALLADIGRKR 
GGLMAGGKVN LQKAAEVVIT DFRTGTWGRI TLETPDEFMQ WQAAGQVLDA QRQARRDARN 
QKKIPQRDAA AAAAAAAMST DAADAQPD