| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2480 |
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| Symbol | |
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| ID | 6160466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2700285 |
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| End bp | 2702825 |
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| Gene Length | 2541 bp |
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| Protein Length | 846 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641665250 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001791510 |
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| Protein GI | 171059161 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0000000921222 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGCTGC TGCTCGTGGG CGTGATCTGG ATCGCGGCCT ACGAGCGGGT GGACTTCGAA
CACGACCAGG CGCTGTCGGC CGAGCTGGCC AAGAACAACG ACCTGGCGCT GGCCCACGAA
GAACGCACGA TGCGATCCAT CGACGTGTTC GACAACGCCC TGCGCACCGT GCGCCACCTG
CACCTGCACG GTGGCGTGCC GCGCGACCTG CGGCCGCTGC TGGCGGCATC GGGCCTGGAC
GCGCGCTACT ACACGGTGTT TTCGGTGATC GGCGCCGATG GCGAGGTGCT GGCCTCCAAC
GCCCCGGACC TGACGCAGAA CTTCTCGGAC CGCGGCTACT TTCGCGAGCA CGTCAAGGAC
CCGGCCGACA GGCTGCTGAT CGGCCAGCCG ATCCTCGGGC GGATGACCGG GCGCTGGGTC
GTGGCGCTGA CCCGGCGCAT CGAGACACCG GGTGGCGGAT TCGGCGGGGT GATGTTCGTC
GCGATGGATC CGGCCTTCCT GGCGACGCTG CATGAACAGG TCTCGCAGGG GCCCGGCGGC
GCCACCGCGC TGATCGGGCT CGACGGCATC GTGCGGGCCC GGCGCAGCGG CAACGCCGTC
AGCTTCGGCG ACGACGCCAG CGGCTCGCAG GTGTTCGAGT CGCTGCGCAC GGCCCGCGTG
GGCAACTACG TCGCCATCGG GCGCATCGAC GGCGCGCTGC GCGCGACCAG CTATCGACGC
CTGAACAACT ACCCGCTGGT CTCGGTGGTG TCGTCCGCGA TGAGCGACGT GCTGGCCAGA
ACGCGCGAGC GCGACCGCGC CATCTACGGC GCCGCGGCGT TCGGCACGCT GCTGACGCTG
GCCCTGGGCC TGTCGACGGC GGTCATGCTC AGGCGCAGCA TGCGGGCGGT CGACGAAGCC
GAGGCGGGCA AGCAGGTCTA CGTCGACCTG AACCGGGCCT TGAACGAAAG CGAGTCGCGC
GCCAACCGCA TCATCGAAAG CACGCCCAGC GCCATGGTCG TGGTCGAAGC CGACGGAACC
ATCGCGCGCG CCAACACCCG TGCCGAGGCC CTGTTCGGCT ATGACGCCGG GGGGATGAGC
GGCTTGGCGG TCGATCGGCT CGTGCCCGAG CGTGTGCGTG ACCGCCACGC CACCCACCGC
AGCGGCTTCA TGAGCAACGG ATCGACGCGC ACGATGGGAC AGGGCATCGA GCTCTTTGCC
TGTCGCAAGG ACGGCTCGCT GTTCCCGGTC GAGATCGGCC TGGCGCCGCT CACGACGGGG
GAGATGCGGC AGACCATCGC GTCGGTGATC GACATCACGC AGCGCAAGGC GATGCAGGCC
GAGCTCACGC AGCACCGCGA TCGCCTCGAG GAACAGGTCG CCGCGCGCAC CGTCGAGCTC
GTCAACGCGC GCAACGAGGC CGAGCGGCTG GCGCAGGTCA AGGCGCAGTT CCTGGCCAAC
ATGAGCCACG AGATCCGCAC GCCGCTCAAC GCGATCGGCG GCATGGCGCA CCTGATCCGC
CGCCAGGGGC TGTCGGAAAA GCAGACCCGG CAGATGGACT CGCTCGAACG TGCGAGCGCG
CATCTGCTCT CGGTCATCAA CTCGATCCTC GAACTCTCGA AGATCGATGC GGGCGCCTTG
CACCTGGCCA GCGAGCCGGT CAGCGTGACC TCGCTGGTGC ACGAGGTGAT CGACCTGCAG
CGCCAGCAGG CCACCGACAA GCACATCACC CTGCGCTGCG AACTGGCGCT GCGCACGGAT
GCGTGGGTCG GCGACCCGAC GCGGCTGCGG CAGGCGCTGC TGAACTACGT GTCCAACGCC
ATCAAGTTCA CGGGCTCGGG CGCCGTGCTC ATCCGCGTCG ACCCGGTCGA CGAGGACGCG
GCCAGCGCGC TGATCCGCTT CGAGGTGCAG GACACCGGCA TCGGCATTTC ACCGGACGCC
ATGCCGCGCC TGTTCAAGGC CTTCGAGCAG GCCGACAACT CCCACACGCG CCAGTACGGC
GGCACCGGCC TGGGCCTGGC CATCACCCGC ATGGTGGCGC GCCAGATGGG CGGCGACTCG
GGCGCGACGA GCCTGCCGGG CGTCGGCAGC ACCTTCTGGT TCACCGCCCG CCTCGCCAAG
GCACCGGCCG CCGCCGTGGC CGCCGATGCC CGGGACCGGC GGCCGTCGCT GGAACTGCTG
ATCGAGCGGC ACGCACGCAC CGCCGTCCTG CTGGTCGACG ACGAGCCGAT CAACCGCGAG
GTCGCGGCGG AGATCCTCGA GGACGCGGGG TTCGACGTCA CGCTCGCCAG CAACGGCATG
GAGGCACTCG AGCGGCTGCA GCGCCACCCG GTCGATCTCG TCATCATGGA CATCCAGATG
CCCGGCATGG ACGGCCTGAC CACGACGCGG CGCATCCGCC AGATGCCCGA CCGCGCCCAC
CTGCCGATCA TCGCGATGAC CGCCAATGCA TTTGCAGAAG ACGAGACCGA GTGCTTGAAT
GCCGGCATGA ATGCGTTCAT TCCCAAGCCG ATCGACCCCG AACGGCTCTA CCGCATCGTC
CTGAGCTGCC TGGACCGTTG A
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| Protein sequence | MTLLLVGVIW IAAYERVDFE HDQALSAELA KNNDLALAHE ERTMRSIDVF DNALRTVRHL
HLHGGVPRDL RPLLAASGLD ARYYTVFSVI GADGEVLASN APDLTQNFSD RGYFREHVKD
PADRLLIGQP ILGRMTGRWV VALTRRIETP GGGFGGVMFV AMDPAFLATL HEQVSQGPGG
ATALIGLDGI VRARRSGNAV SFGDDASGSQ VFESLRTARV GNYVAIGRID GALRATSYRR
LNNYPLVSVV SSAMSDVLAR TRERDRAIYG AAAFGTLLTL ALGLSTAVML RRSMRAVDEA
EAGKQVYVDL NRALNESESR ANRIIESTPS AMVVVEADGT IARANTRAEA LFGYDAGGMS
GLAVDRLVPE RVRDRHATHR SGFMSNGSTR TMGQGIELFA CRKDGSLFPV EIGLAPLTTG
EMRQTIASVI DITQRKAMQA ELTQHRDRLE EQVAARTVEL VNARNEAERL AQVKAQFLAN
MSHEIRTPLN AIGGMAHLIR RQGLSEKQTR QMDSLERASA HLLSVINSIL ELSKIDAGAL
HLASEPVSVT SLVHEVIDLQ RQQATDKHIT LRCELALRTD AWVGDPTRLR QALLNYVSNA
IKFTGSGAVL IRVDPVDEDA ASALIRFEVQ DTGIGISPDA MPRLFKAFEQ ADNSHTRQYG
GTGLGLAITR MVARQMGGDS GATSLPGVGS TFWFTARLAK APAAAVAADA RDRRPSLELL
IERHARTAVL LVDDEPINRE VAAEILEDAG FDVTLASNGM EALERLQRHP VDLVIMDIQM
PGMDGLTTTR RIRQMPDRAH LPIIAMTANA FAEDETECLN AGMNAFIPKP IDPERLYRIV
LSCLDR
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