Gene Lcho_2445 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2445 
Symbol 
ID6161865 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp2653822 
End bp2654793 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content69% 
IMG OID641665215 
Producthydrogenase accessory protein HypB 
Protein accessionYP_001791475 
Protein GI171059126 
COG category[K] Transcription
[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0378] Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase 
TIGRFAM ID[TIGR00073] hydrogenase accessory protein HypB 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.120884 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGTGTCG TCTGCGGATG CAGCAGCGGG GCGCCAGCCG CCCCGCATGA ACATGTCAGC 
GTGGCGCCGA ATACCGGCGA CCTGCATTAC GGCGCCGGAG CGGCGCGGGT GTCGGTGCCG 
GGCATGAGCC AGGCGCGCGC CATCAAGCTC GAGGTCGACG TGCTGGGCGA GAACAACCGC 
CTGGCCGCGC ACAACCGCGC GCACTTCGCC TCGCACGGCA TCACCGCCTA CAACCTGGTG 
TCGAGCCCCG GCTCGGGCAA GACCACGCTG CTGTGCGCCA CCATCGAGGC GCTCAAGAGC 
GCCGCGCCAC AGCTGCCGCT GGCGGTGATC GAGGGCGACC AGCAGACCTC GAACGACGCC 
GACCGCATCC GCGCCACCGG CGCCGCGGCG ATCCAGATCA ACACCGGCAA GGGCTGCCAT 
CTGGATGCGC AGATGGTGGG TGACGCGTTC GCGCGGCTCG ATCTGCACGG GCACAGCCAC 
AGCCACGGTC ACGAACACAC GCACGACGGA CACGGACACG CGCAGGGCCA TCACCACGCC 
GACGCACTGC TGTTCATCGA GAACGTCGGC AACCTCGTCT GCCCGGCAAT GTGGGACCTG 
GGCGAGGCCG CCAAGATCGC CATCCTCTCG GTCACCGAGG GTGAGGACAA GCCGATCAAG 
TACCCCGACA TGTTCGCCGC CGCCCGGCTC ATGGTGCTCA ACAAGATCGA CCTGCTGCCC 
TACCTCGACT TCGACATCCC CAAATGCATC GAGTACGCAC GCCGCGTCAA CCCGGGCATC 
GAGGTGCTGC TGGTGTCGGC CAGGACCGGC CAGGGCATGG ACGCCTGGAT CGACTGGCTG 
TTGCACGCGG GCGAGCCGGC CCAAGCGCAC GAGCACGACA CCGCCGATGA CGCCGGCGCC 
ACCGAGGCCG CGCTGCGCAG CCGGATCGCC CAACTCGAAG CGCAGCTGGC CGCCGCCGGC 
ATCAAGGCCT GA
 
Protein sequence
MCVVCGCSSG APAAPHEHVS VAPNTGDLHY GAGAARVSVP GMSQARAIKL EVDVLGENNR 
LAAHNRAHFA SHGITAYNLV SSPGSGKTTL LCATIEALKS AAPQLPLAVI EGDQQTSNDA 
DRIRATGAAA IQINTGKGCH LDAQMVGDAF ARLDLHGHSH SHGHEHTHDG HGHAQGHHHA 
DALLFIENVG NLVCPAMWDL GEAAKIAILS VTEGEDKPIK YPDMFAAARL MVLNKIDLLP 
YLDFDIPKCI EYARRVNPGI EVLLVSARTG QGMDAWIDWL LHAGEPAQAH EHDTADDAGA 
TEAALRSRIA QLEAQLAAAG IKA