Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2422 |
Symbol | |
ID | 6164131 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 2629299 |
End bp | 2631395 |
Gene Length | 2097 bp |
Protein Length | 698 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641665192 |
Product | hypothetical protein |
Protein accession | YP_001791452 |
Protein GI | 171059103 |
COG category | [S] Function unknown |
COG ID | [COG2828] Uncharacterized protein conserved in bacteria [COG3181] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.0403526 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCACACA CGATCCCCTG CACCCTGATG CGCGCCGGCA CCTCCCGCGG CCCCTTCTTC CTGCTCGATT CGCTGCCCGT CGACGAGACG GCGCGCGACG AGGCCCTGAT CGGCGCGATC GGCGCTTCCG ACCTGCTGCA GGTCGACGGC CTGGGCGGCG GCAGCACGCT GACCAGCAAG GTCGCGATCG TCTCGCGCTC GGCGCAGCCG GACTGCGACG TCGACTACCT GTTCGCGCAG GTCGGTGTCG GCCAGCGTTC GGTCGACACC CGGCCCAACT GCGGCAACAT GCTCTCGGGC GTGGGGCCGT TCGCGATCGA ACAAGGCCTG GTCGCGGCAC GCGACGGCGT CACCACGGTG CGGGTCTTCA ACGTCAACAC CCGCTCGCGC ATCGAGGTAA CGGTGCAGAC GCCCGGCGGC CAGGTGCGCT ACGACGGCGA CACCCGCATC GACGGCGTGG CCGGCACCGC GGCGCCGATC GCACTGAACT TTCTCGACGC CTGGGGCGCG GTCACCGGCT CGGTGTTCCC GACCGGCCAG CGCCAGGACG TGATCGACGG CGTGGCGGTG ACCTGCATCG ACGCGGCGAT GCCGCTGATG ATCGTGCGCG CTGCCGACCT CGGATTCAGC GGCCGCGAGA GCCCCGCCAC CTTCGATGCC GATGCCGCCT TCCTCGAGCG CCTGGAGCGG CTGCGCCGCA TCGCCGGCGA GCGCATGGGC CTGGGCGACG TGTCGAACAG CGTGATCCCC AAGCCGGTGC TGGTGAGCGC GGGCGAGGAC GCCTACAGCA TCACCTCGCG CTATTTCACG CCGCGGCGCT GCCATGCCTC GCACGCCGTC ACCGGCGCCA TCGGCGTGGC CACGGCGCTG GCCCTGCCCG GCACGGTGGC CAGCAGCAGC GCGGCGCTCG GCGGCGCGCA CCGGCTGACG GTGCTGCACC CGGCCGGGCG CATCGACATC GAGGTGGCGA TCGACGGCAG CGGCGACAGC GCCCGCATCG TCACCGCCGC CCTGGTGCGC ACCGCCCGCA AGATCATGCA GGGCGACCTG CACATCCCCG ACTACGTTTT TTCCCGACCC GAACCGACTG CAGGAGACAC CATGAAGCAG ACCCCGACCC AGGCCAGACA GAGCCTTGCC AAGACCCTGG CACCGATGAT CGCCGCCGCC ACGCTCGCCA CCGCGTCGGG CACGGCGCTG GCATGGCCCG ACAAGACCAT CACGATCGTC GTGCCCACCG CGGCCGGCGG CGGCAACGAC GCGATGGCGC GCACCATCGC CGCCAAGCTC GGGCCGCTGC TGGGCCAGAC CGTCATCATC GACAACCGCG CCGGCGCCAA CGGCTCGATC GCCAGCGAAT ACGTTGCCCG CGCCACGCCC GACGGCCACA CGCTGATGCT CGGCTACATC GCCACCCACA GCATGAACCC GGCGCTGCAG AAGCTGCGCT ACGACCCGGT GAAGGATTTC GAGCCGGTCG GTCTGGTCGG CTATTCGCCC ACGCTGATGG TGGCGCACGC CAGGACGCCG GTGAAGGACG TCAAGGACCT GGTGGCCCAG CTCAAGGCCT CGCCCGACAA GTACACCTAC GCCTCGGCCG GCAACGGCAC GGCGCCGCAT TTCGCGGCCG AGCTGTTCAA GCTGAACGCG GGCGTGACGA TGCTGGGCAT CCCGTACAAG GGCTCGGCAC CGGCCGTGAC CGACACCATC GGCGGCACCA CGCAGTTCAT GTTCCCGAGC CTGTACACGG CCTACCCGCA GGTCAAGGCC GGCAAGCTGC GTGCGCTGGC GGTCGCCGGC CCGAAGCGCG TGCCCAGCCT GCCCGACGTG CCCACGCTCA AGGAAGCCGG CATCGACGGC GTCGACGTGA CCCAGTGGTA CGCGCTCTTC GCCCCGGCCA AGACACCCAA GGCGGTCGTC GACCAGCTCA ACAAGGCGCT CAACCAGGTG CTCAAGGACG CGGACACGAT CAAGCGCATC GAGGACCACG GCGCCGACGT CGACACCAGC ACGCCCGAAC AGCTGCGCGC GATGGTCGAC AGCGAGCTCG CCAAGTGGAA GTCGGTGGTC CAGAAGGCCA AGCTGACGGC CGATTGA
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Protein sequence | MAHTIPCTLM RAGTSRGPFF LLDSLPVDET ARDEALIGAI GASDLLQVDG LGGGSTLTSK VAIVSRSAQP DCDVDYLFAQ VGVGQRSVDT RPNCGNMLSG VGPFAIEQGL VAARDGVTTV RVFNVNTRSR IEVTVQTPGG QVRYDGDTRI DGVAGTAAPI ALNFLDAWGA VTGSVFPTGQ RQDVIDGVAV TCIDAAMPLM IVRAADLGFS GRESPATFDA DAAFLERLER LRRIAGERMG LGDVSNSVIP KPVLVSAGED AYSITSRYFT PRRCHASHAV TGAIGVATAL ALPGTVASSS AALGGAHRLT VLHPAGRIDI EVAIDGSGDS ARIVTAALVR TARKIMQGDL HIPDYVFSRP EPTAGDTMKQ TPTQARQSLA KTLAPMIAAA TLATASGTAL AWPDKTITIV VPTAAGGGND AMARTIAAKL GPLLGQTVII DNRAGANGSI ASEYVARATP DGHTLMLGYI ATHSMNPALQ KLRYDPVKDF EPVGLVGYSP TLMVAHARTP VKDVKDLVAQ LKASPDKYTY ASAGNGTAPH FAAELFKLNA GVTMLGIPYK GSAPAVTDTI GGTTQFMFPS LYTAYPQVKA GKLRALAVAG PKRVPSLPDV PTLKEAGIDG VDVTQWYALF APAKTPKAVV DQLNKALNQV LKDADTIKRI EDHGADVDTS TPEQLRAMVD SELAKWKSVV QKAKLTAD
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