| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2299 |
|---|
| Symbol | |
|---|
| ID | 6163551 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2493495 |
|---|
| End bp | 2495039 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641665069 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_001791330 |
|---|
| Protein GI | 171058981 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 59 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGA ACCGAACCCG GCCCCCGATG CGCACGCACA TGGCCACGCT GTGCACGGCC
GTGCTGCAGA TCGGCTTGAT GCACGACGCG ACGGCGCAAG CGGCACGCAC GGAGGCGGCC
ACCGACCTGG CGCAGGCCGC CCCCCCACGC ACGGCGGCAA CCGAGCAGTC GGCCTACGGC
GAACAGCAGG CCCAGTGGCT GCTGAAGATG CTCGAGGCGC CGCCGCAGGC CAGCCAGAAC
GCGGCCCTCG CGCTGCTGCG CCAGCGCGTG CTGGCGGTGG TGCTCGAACA CCCCGAGTCC
CGCGCCGCCG GCGCCTCGTT GCGCGGCGCC CAGGCGTCCA CCCGCGAGGC CCGCTCGGCC
AAGCGGCCGC AACTCGAGCT CGACGCCGAG ACCGGCTATC GCCACAGCGA CCCCAGCACC
CTCACCCAGA ACCCGCAGCG CCGCCACGAG ACCGGCAGCG TCGGGCTGAC GCTGCGCCAG
AGCGTCTACG ACTTCGGCGC CAACGACGCG GCGATTGCAG CATCCGAGGA GTTCGCCGCC
GGCGTGGCCG CACGGGCCGA CGGCCGGCGC GGCGACCTGG CCCTGCGCGC CGTGCAGGCC
ACGCTCGACC TGCTGCGCGC GCGCCAGCTG CTCGACCTCG CCCGCATCAA CCTGCAGGCG
CGCGAGGAGA TGGTGCGCTA CCTCAACAGC CGCTACGAAC TCGGCGGCGG CACCGTCAGC
GATGTCTGGC GGGCGCAGTC GCGGCTGGCC GACGCCCGCG GCGCGCTGGC CCAGGCACAG
GCCCGCGAAC GCTCGAACGC GGCGATCTAC CGCGAGCTGT TCGCCCACGC GCCCGACGAC
ACGCTCGATC TCGCCCTGCC GCCGCCGCAG GACACCCGGG CCCTGATGAG CGCACCGCTG
CAGTCGGTGC AGGATTTCGC CGCGCTGCGC GGTGCCGCCG CCGCGCTGCG CACCGCCGAG
CAGGAGCTCG AGGCCACCCG CCGGCGCGAC AAGCCGCGTG TCAACCTCGA ACTCGGCGCC
CAGCGCCGCG ACCTGATCGG CCGCGGCAGC CCCGGCACCG ACTGGCAGGC CAGCCTGGTG
CTGCGCCACA GCTTCTACAG CGGGGGGGGC GACGACGCCC GCGTCGACCA GGCGCAGGCC
CGCATCAACG AGGCCGACGA GCAGCTGCGC AACACCCGCC TGCAGCTCGA ACGCGCGCTG
CTGCAGGCCC TCAACGACGA CGCCGTCGGC ACCGAGCTGC TGGCGGCGCG GCGCGACGCC
GTGCGGCTGG CGGTCGACGC GCTGCGCGGC GTGCGCGAGC AGTTCGCCAA CCGCCGCGGC
AGCCTGCTCG ACCTGCTGAA CGCACAGGAC GTGCTGCACG GCGCCGGCCT CGAATGGGTC
GATGCCCAGC TCGGCCAGGC GCTGGCGAAA TGGCGGGTGG CGTACTTCAG CGCCGCGCTG
CTGCCGTGGC TCGGGCTCGA GCCGCAGAGC GCCCATGCCC ATGCCGACGC CGGCCCACCG
CCGTCGGCGC ACGTCTCGCC CTCGCTCGCC GCCGGCAGCC GCTGA
|
|---|
| Protein sequence | MNQNRTRPPM RTHMATLCTA VLQIGLMHDA TAQAARTEAA TDLAQAAPPR TAATEQSAYG
EQQAQWLLKM LEAPPQASQN AALALLRQRV LAVVLEHPES RAAGASLRGA QASTREARSA
KRPQLELDAE TGYRHSDPST LTQNPQRRHE TGSVGLTLRQ SVYDFGANDA AIAASEEFAA
GVAARADGRR GDLALRAVQA TLDLLRARQL LDLARINLQA REEMVRYLNS RYELGGGTVS
DVWRAQSRLA DARGALAQAQ ARERSNAAIY RELFAHAPDD TLDLALPPPQ DTRALMSAPL
QSVQDFAALR GAAAALRTAE QELEATRRRD KPRVNLELGA QRRDLIGRGS PGTDWQASLV
LRHSFYSGGG DDARVDQAQA RINEADEQLR NTRLQLERAL LQALNDDAVG TELLAARRDA
VRLAVDALRG VREQFANRRG SLLDLLNAQD VLHGAGLEWV DAQLGQALAK WRVAYFSAAL
LPWLGLEPQS AHAHADAGPP PSAHVSPSLA AGSR
|
|---|
| |