| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2248 |
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| Symbol | |
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| ID | 6163223 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2453396 |
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| End bp | 2455150 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641665018 |
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| Product | hypothetical protein |
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| Protein accession | YP_001791279 |
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| Protein GI | 171058930 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4383] Mu-like prophage protein gp29 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCATCGA AGATCCTGGA CCAATACGGC AAGCCGATCG ACCTGGCCGC CATCCGCGAG
CCACAGACCG AGCGCGAAGC ATCCGCCACC GGCGGCGCCG CTCGCGTGGG CTGGCTGCAC
CGCGAGTTCG ATGCGCACCC GGGCCGCGCG CTCACGCCGG CACGGCTCAA CGCCATCCTG
ACGCAGGCCG AGCAAGGCGA CATCACTGCG CAGCTCGAGC TGGCCGACGA CATGGAAGAG
CGCGACGGAC AGATCTTCTC GGAGCTCGCC AAGCGCAAGA CCGCCGTGAC CACGCTCGAA
TGGGACGTGG AGCCGCCCGA CGACGCCAGC TCGGCCGAGC AGGCAATGGC CGACCAGGTG
CGCGACTGGA TCAAGCAGAT CCCGAACTTC GAAGAAGACG TGCTGCTTGA GCTGATGGAC
GCGGTGCTCA AGGGCTACAA GCCGATCGAG ATGTGGTGGG AGCTCGACCA GGGCACGCGC
CAGCCGCGCT TCGCGCCGCG CCCGCAGCGC TGGCTGTGCA TCGGCGAAGA CCGCAACAGC
CTGCGCCTGC GCGACGGCGC CAGCCAGTAC GGCGTGCCGC TGCAGCCCTA CGGCTGGCTG
CTGCACGTGC ACAAGAGCCG CAACGGCTAC CTGGCGCGCG GCAGCCTGGC GCGGGTGCTG
GCCTGGCCGT TCCTGTTCAA GCACTACGCG GTGCGCGACC TGGCCGAGTT CCTCGAGATC
TACGGCCTGC CGATGCGCCT GGGCAAGTAC CCGGCCGGGG CGTCGGACGA CGAGAAGCGC
AAGCTGCTGC AGGCGGTGGT CAGCATCGGC CACAACGCCG GCGGCGTGAT CCCGGCCTCG
ATGGCGATCG ACTTCCAGAA CGCGGCGCAG GGCAACGAGG CGCCGTTCAA GACGATGTGG
GATGGCATGG ACGCCGTGCA GAGCAAGATC ATCTTGGGCC AGACGCTCAC CAGCAGCGAG
GGCAAGAGCG GCAGCCAGGC GCTGGGCAAC GTGCACAACG AGGTGCGGCT GGACATCCTG
CGCAGCGACG CCAAACGCGT GGCCGCCACG CTGACCAGCC AGCTGATCGC GCCGCTGGTG
CTCTTCAACA TCTCGGGCGC TGACCCGCGC CGGCTGCCGC GCTTCTGCAT CGACGTGCCC
GATCCCGAAG ACCTGGCGCT CTATGCCGAG GCGCTGCCCA AGCTGGCCGC GGCGGGCATG
CGCATCGGGG TGAGCGATCT GCACCGGCGC TTGCGGATCG AAGAGGCCGA TGATGGCGAG
GAGGTGCTGA AGGGGCCGCC GGCGCCGACG ATGCCCGGCG CGCCGCCTGC GATCGGTGCG
CCAGGTGCGA TCGACCCCGA GGCCGAAGAC TCGGCAGACG ACGAAGACCC CGCCATGCCA
CCTGGTGTGA AGCCGCCCGT TGCGAAGCGC ACCCGCGCCA AGAAGGCCCC GCCCGCCGCG
GCCGCCGTCA AGCAGGTGGC GCTGGCCGGC ACCACGCCAC CCGCGCCGGC GCCGCGTGAT
GCGCTCGACG ACCTGGTCGA CTCCGCGCTG AGTGATTGGC AGCCGGTGAT GGCCGCGCTG
GTCGAGCCCT TGATGGCCGA AATCGACAAG GCCCTTGCAT CAGGCGAAAG CCTGCAGGCC
TTCCGCGACC GCCTGCCCAA GATCGCCAAG CAGATGGATG ACGCGCCGCT GGCCGAGCGC
GTGGCGCGCG CCACGTTCGT GGCCAGGCTG GCGGGCGAGG CGGATCTCGA CCTCAGCGGC
GACGAGCTCG TCTGA
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| Protein sequence | MASKILDQYG KPIDLAAIRE PQTEREASAT GGAARVGWLH REFDAHPGRA LTPARLNAIL
TQAEQGDITA QLELADDMEE RDGQIFSELA KRKTAVTTLE WDVEPPDDAS SAEQAMADQV
RDWIKQIPNF EEDVLLELMD AVLKGYKPIE MWWELDQGTR QPRFAPRPQR WLCIGEDRNS
LRLRDGASQY GVPLQPYGWL LHVHKSRNGY LARGSLARVL AWPFLFKHYA VRDLAEFLEI
YGLPMRLGKY PAGASDDEKR KLLQAVVSIG HNAGGVIPAS MAIDFQNAAQ GNEAPFKTMW
DGMDAVQSKI ILGQTLTSSE GKSGSQALGN VHNEVRLDIL RSDAKRVAAT LTSQLIAPLV
LFNISGADPR RLPRFCIDVP DPEDLALYAE ALPKLAAAGM RIGVSDLHRR LRIEEADDGE
EVLKGPPAPT MPGAPPAIGA PGAIDPEAED SADDEDPAMP PGVKPPVAKR TRAKKAPPAA
AAVKQVALAG TTPPAPAPRD ALDDLVDSAL SDWQPVMAAL VEPLMAEIDK ALASGESLQA
FRDRLPKIAK QMDDAPLAER VARATFVARL AGEADLDLSG DELV
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