Gene Lcho_2205 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2205 
Symbol 
ID6163307 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp2406114 
End bp2406776 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content74% 
IMG OID641664974 
Productthiamine-phosphate pyrophosphorylase 
Protein accessionYP_001791236 
Protein GI171058887 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0352] Thiamine monophosphate synthase 
TIGRFAM ID[TIGR00693] thiamine-phosphate pyrophosphorylase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.789259 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGATC GACTGCCCAC GCGCTGGCAG CCTCGCCACG CGCTGTGCCT GGTCACCGAC 
GGCTCGCTGT GCGCGCCACG CACGCTGGTC GAGGTGGTGA GCGCGGCGCT GCAAGGCGGT 
GTCGGGATGG TGCAGCTGCG CGAGAAAAAG CTCGACAGCC GCGCCTTCGT CGAACGCGCC 
CGCGCCATCC AGGCGCTGAC CGCGTCGGCG GGTGTGCCGC TGGTCATCAA CGACCGGCTC 
GACATCGCGC TGGTGGTCGG CGCCGACGGC CTGCACGTCG GCCAGAGCGA CCTGTCGGTG 
GCCGACGTGC GGCTGTGGCT GCCCGACGCC CTCGTCGGCC TGTCGATCGA GTCGATGGCC 
GACCTGCTGG CGGCGCCGGC CGGGGTCGAC TACCTCGGCG TCAGCCCCGT CTTCGCCACC 
GCCACCAAGG CCGATGCGGC TGCCGCGCTG GGCCTCGAAG GCCTGGCGGC GATCCGTGCC 
GCCACCCGGC TGCCGCTGGT GGCCATCGGC GGCATCGGCG CACACAACGC CCGCGCCGTG 
CTGCGCCACG GCGCCGACAG CCTGGCGGTG GTCAGCGCCA TCTGCGCCGC CGCCGACCCC 
CGCGCCGCAG CCGCCGAACT GGCCGGCTGC ATCGAATCCG AATCGAATTC CCGCCCGTCA 
TGA
 
Protein sequence
MADRLPTRWQ PRHALCLVTD GSLCAPRTLV EVVSAALQGG VGMVQLREKK LDSRAFVERA 
RAIQALTASA GVPLVINDRL DIALVVGADG LHVGQSDLSV ADVRLWLPDA LVGLSIESMA 
DLLAAPAGVD YLGVSPVFAT ATKADAAAAL GLEGLAAIRA ATRLPLVAIG GIGAHNARAV 
LRHGADSLAV VSAICAAADP RAAAAELAGC IESESNSRPS