| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2171 |
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| Symbol | |
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| ID | 6163150 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2376173 |
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| End bp | 2377813 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641664939 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_001791202 |
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| Protein GI | 171058853 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.109477 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGGAC TGATGCAAGA CCAGCCGCTG CTGATTTCCA GCCTGCTGAC CCACGCCGAA
CGCCATCACG GCGAACAGGA AATCGTCTCG CGCCGCGTCG AGGGCGACCT GCACCGCCAG
ACCTATCGCC AGCTCGCCCA GCGCTCGCGC CAGCTCGCCA AGGCGGTCGC CGCACTCGGC
GTCACCGAAG GCCAGCGCGT CGCCACATTG GCCTGGAACG GCCATCGCCA CATGGAGCTG
TATTACGCCG TGTCGGGCTC GGGCGCCGTG CTGCACACGC TCAACCCGCG CCTGCATCCC
GACCAGGTGG TCTGGATCGC CGACCACGCC GAAGACCAGG TGCTGTGTTT CGACCTGACC
TTTTTGCCGC TGGTCGAGGC CATCGCCGAG CGCGTCTCGA CGATCAGGCA TTTCGTCGTG
ATGACCGACC GCGCCCACAT GCCGGCCGCC AGCAAGGTGC CGAACCTGCT GTGCTACGAA
GACCTGCTCG CCGCACAGGA CGACGCCTTC GAATGGCCCG TGTTCGACGA GAACCGCGCC
AGCTCGCTGT GCTACACGAG CGGCACCACC GGCCACCCGA AAGGCGCGCT CTACAGCCAC
CGCTCGACCG TGCTGCACAC CTGGGCCGCG GCGCTGCCCG ACAGCCTGAA CTGCTCGGCG
CGCGACGTGA TCCTGCCGGT GGTGCCGATG TTCCACGTCA ACGCCTGGGG CCTGCCCTAC
ATCGCGTGCA TGGTCGGCGC CAAGCTGGTG TTCCCCGGCC CGTGGCTCGA TGGCAAGAGC
CTGCACGAAC TGTTCGAGGG CGAGGGCGTC ACGATGTCGG CCGGCGTGCC CACCGTCTGG
CAGGGCCTGC TGGCGCACGT CGAGAGCCAC CACCTGAATT TTTCCACCAT GCGCCGCACG
GTGATCGGCG GCTCGGCCTG CCCGCCGGCC ATGATGCGCG CCTTCCAGGA GCGTTACGAC
GTGCAGGTGC TGCACGCCTG GGGCATGACC GAGATCAGCC CGGTCGGCAC CGTCTGCACG
CTCAAGCCGC GCCATGAGTC GCTCGGCGCC GACGAACGCA TGGCGGTGCA GGCCAAACAG
GGCCGCGTGG TCTACGGCGT CGACATGAAG ATCGTCGGCG ACGATGGCCA GCCGCTGCCG
CACGACGGCA AGGCGGCCGG CGAGCTGATG GTGCGCGGGC CGTGGATCAT CCGCAGCTAC
CTGAAGAGCG AGGGTGGCGA CCCCTTGGCG TATCAGGATG GTCAGGGCTG GTTCCCGACC
GGCGACGTCG CCACCATCGA CGCCGACGGC TACATGCAGA TCACCGACCG CGCCAAGGAC
GTCATCAAGT CCGGCGGCGA GTGGATCGGC TCGATCGACC TGGAGAACGT GGCGATGTCG
CACCCCGGCG TCGCGATCGC CGCCTGCATC GCCGCCCGCC ACCCCAAGTG GGACGAGCGC
CCGCTGCTGC TGGTGGTGAA GAAGCCCGGC GCCGAGCTGA CGCGCGAGGA TCTGCTCAAG
CACTACGAAG GCAAGATCGC CAAGTGGTGG ACGCCCGACG ACGTGCTCTT CGTCGACTCG
ATCCCGCTCG GCGCCACCGG GAAGATGCTC AAGAACCGCC TGCGCGACCA GTATCGCGAC
CACCTGATGT CGGCGGCCTG A
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| Protein sequence | MNGLMQDQPL LISSLLTHAE RHHGEQEIVS RRVEGDLHRQ TYRQLAQRSR QLAKAVAALG
VTEGQRVATL AWNGHRHMEL YYAVSGSGAV LHTLNPRLHP DQVVWIADHA EDQVLCFDLT
FLPLVEAIAE RVSTIRHFVV MTDRAHMPAA SKVPNLLCYE DLLAAQDDAF EWPVFDENRA
SSLCYTSGTT GHPKGALYSH RSTVLHTWAA ALPDSLNCSA RDVILPVVPM FHVNAWGLPY
IACMVGAKLV FPGPWLDGKS LHELFEGEGV TMSAGVPTVW QGLLAHVESH HLNFSTMRRT
VIGGSACPPA MMRAFQERYD VQVLHAWGMT EISPVGTVCT LKPRHESLGA DERMAVQAKQ
GRVVYGVDMK IVGDDGQPLP HDGKAAGELM VRGPWIIRSY LKSEGGDPLA YQDGQGWFPT
GDVATIDADG YMQITDRAKD VIKSGGEWIG SIDLENVAMS HPGVAIAACI AARHPKWDER
PLLLVVKKPG AELTREDLLK HYEGKIAKWW TPDDVLFVDS IPLGATGKML KNRLRDQYRD
HLMSAA
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