Gene Lcho_2152 details

Gene Information

• Locus tag: Lcho_2152
• ID: 6163724
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 2353393
• End bp: 2355108
• Gene Length: 1716 bp
• Protein Length: 571 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 641664920
• Product: putative glutamate synthase (NADPH) small subunit
• Protein accession: YP_001791183
• Protein GI: 171058834
• COG category: [C] Energy production and conversion; [E] Amino acid transport and metabolism; [R] General function prediction only
• COG ID: [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases; [COG1149] MinD superfamily P-loop ATPase containing an inserted ferredoxin domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 0.00000764519
• Fosmid Hitchhiker: No
• Fosmid clonability: decreased coverage

Sequence

Gene sequence

ATGACCATGC AGAAACCGTT TGCGATCACG CTCGACCCGG GCTCGTCGCT CGCCAACAAG 
ACCGGCACCT GGCGCACCGA ACGGCCGGTC TACGTCGACC GCCTGCCACC GTGCAACGCC 
CAGTGCCCCG CCGGCGAGGA CATCCAGGGC TGGCTGTTCC ACGCCGAAGG CGGCGACTAC 
GAAGCCGCCT GGCGCCACCT GACGCGCGAC AACCCCTTCC CCGCGATCAT GGGCCGGGTC 
TGCTACCACT CGTGCGAAGG CGTCTGCAAC CGCGGCCGCA TCGACGCGCC GGTGGGCATC 
AACTCGGTCG AGCGCTTTCT CGGCGACGAG GCCATCAAGC GGGGCTGGCA GTTCACGCCG 
CCCACAAACG AGAGCGGCAA GCAGGTGCTG ATCGTCGGCG CCGGGCCGTC GGGCATGTCG 
GCGGCCTATC ACCTGCGCCG GCTCGGCCAC GGCGTGACGG TCATGGAGGC CGGCCCGCTG 
ATGGGCGGGA TGATGCGTTT CGGCATCCCC AAGTACCGGC TGCCGCGCGA CGTGCTCGAC 
GCCGAGATGC AGCGCATCGT CGCGATGGGC ATCGACGTGC AGCTCGGCGC CCGGGTGGCC 
GACATCGCGC AGAGCATGGT CGACGGCGGC TACGACGCGG CGTTTCTGGC GGTGGGCGCG 
CACATCGCCA AGCGCGCCTT CATACCGGCC AAGGACTCGG CCCACATCCT CGACGCGGTG 
TCGGTGCTGC GCTCGATGGC GGGCGCCGAG GGTGAAGGCT CGCAGCCGAT GCTCGGCCGC 
CGGGTGGTGG TCTACGGCGG CGGCAACACC GCCTTCGACG TGGCCCGCAC CGCCCGGCGG 
CTGGGCGCCA CCGAGGCGGT GATCGTCTAC CGCCGCACCC GCGACAAGAT GCCGGCGCAC 
GATTTCGAGG TCGAGGAGGC GCTGCAGGAA GGCGTGATGG TGAAGTGGCT GTCGACCATC 
ACGCAAGCCG GTGACGGCGC ATTGACGATC GAGAAGATGG TGCTCGACGA GCAGGGCCGC 
GCCCAGCCGA CCGGCGAGTT CGAGACGCTC GCGGCCGACT CGCTGGTGCT CGCGCTCGGC 
CAGGACGTCG ATCTGTCGCT GCTCGACGGC GTGCCCGGCC TGGAGCTGAA GGACGGCGTG 
GTGCAGGTCG ACCCCGCCAC GCTGATGACC GGCCACCCCG GCCTGTTCGC CGGCGGCGAC 
ATGGTGCCGG CCGAGCGCAA CGTGACGGTG GCGGTGGGCC ACGGCAAGAA AGCCGCCCGA 
CACATCGACG CCTGGTTGAC GGCGCCCCCA CGCTCTCTGC GTTCGCTGCC CCCCGAGGGG 
GCGCAGGCCG CCTTGGGGCG GCCCGGCGGC GACCTGGCCG CTACGCCGAG CGCCAAGCAC 
CCGCTTGCCA CTTTCGAGCA CCTGAACCCC TGGTACTACA GCGACGCGCC CCAGACGATG 
CGCCCGCAGC TCGACCTGGC GCGCCGCACC AGCAGCTTCG ACGAGGTGCA AGGTGGCCTG 
ACCGAGGACA ACGCGCTGTT CGAGGCGCGC CGCTGCCTGA GCTGCGGCAA CTGCTTCGAG 
TGCGACAACT GCTACGGCGT GTGCCCCGAC AACGCGGTGA TCAAGCTCGG GCCGGGCCGG 
CGCTTCGAGA TCAACCTCGA CTACTGCAAG GGCTGCGGCA TGTGCGCGGC CGAGTGCCCG 
TGCGGCGCGA TCGAGATGGT GGCCGAGACG GGTTGA 

 

Protein sequence

MTMQKPFAIT LDPGSSLANK TGTWRTERPV YVDRLPPCNA QCPAGEDIQG WLFHAEGGDY 
EAAWRHLTRD NPFPAIMGRV CYHSCEGVCN RGRIDAPVGI NSVERFLGDE AIKRGWQFTP 
PTNESGKQVL IVGAGPSGMS AAYHLRRLGH GVTVMEAGPL MGGMMRFGIP KYRLPRDVLD 
AEMQRIVAMG IDVQLGARVA DIAQSMVDGG YDAAFLAVGA HIAKRAFIPA KDSAHILDAV 
SVLRSMAGAE GEGSQPMLGR RVVVYGGGNT AFDVARTARR LGATEAVIVY RRTRDKMPAH 
DFEVEEALQE GVMVKWLSTI TQAGDGALTI EKMVLDEQGR AQPTGEFETL AADSLVLALG 
QDVDLSLLDG VPGLELKDGV VQVDPATLMT GHPGLFAGGD MVPAERNVTV AVGHGKKAAR 
HIDAWLTAPP RSLRSLPPEG AQAALGRPGG DLAATPSAKH PLATFEHLNP WYYSDAPQTM 
RPQLDLARRT SSFDEVQGGL TEDNALFEAR RCLSCGNCFE CDNCYGVCPD NAVIKLGPGR 
RFEINLDYCK GCGMCAAECP CGAIEMVAET G