| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2146 |
|---|
| Symbol | |
|---|
| ID | 6163888 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2346240 |
|---|
| End bp | 2347457 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641664914 |
|---|
| Product | aldo/keto reductase |
|---|
| Protein accession | YP_001791177 |
|---|
| Protein GI | 171058828 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0667] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.000567174 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATTC GCCCGACACC CATGAACGCC GACCTTGAAG GTCAAAACCA GCAACGCCGC
CACCTGATGC TCACCGCCGC CACGCTGGGC GTGGCTCCGT GGCTTCTCTC CGCCTGCGCC
AGTACCGCCG GCGGTGCAGA GGCAGGCCGC TCGCCGGGCC GCCCACAAGC CGCCGGGGCG
CGTCGCCGGC TCGGCCCGCT CGAAGTCTTT CCCGTAGGGC TGGGCTGCCA ATGGCGACCG
GGCGCCACGC CCGGCGTGGT GGTCGATTCG TACAGCAGCC GCTTTGACCG CCCGGCCGCC
ATCCGCCTCA TCCGCCAGGC CGTGGACCAG GGTGTCACGT TGATCGACAC GGCCGAAGCC
TACGGCCCCT TCCTGTCGGA AGACATCGTC GGCGAGGCGC TGCAGGGCAT CCGCGACAAG
GTGGTGCTGG AGACCAAGTT CGGCTTCGAC ATCGATCAGG TCACAGGGCA ACGCCTGCCC
GGTGGCCGCA ACAGCCGGCC CGAGCACATC CGCCGGGTGG TCGACGCCCA GCTGCGGCGC
CTGCGCACCG ACCGCATCGA CGTGCTGATC CAGCACCGGG TGGACCCGAA CGTGCCCATC
GAGGACGTGG CCGGCACGGT CAAGGACCTG ATCGGCGCCG GCAAGGTGCG GCACTTCGGC
CTGTCCGAGC CCGGCCTGCA GAGCGTGCGC CGCGCCCATG CGGTGCAACC GCTGGCGGTG
ATCCAGAACG AATACTCGAT GCTGTGGCGT GGCCCCGAGG CCCAGGTGCT GCCGCTGTGC
GAGGAACTGG GCATCGGCTT CGTCTGCTGG AGTCCGCTGG GCATGGGTTT CCTGGCCGGC
GGCGTGCGGG CGGATTCGCG CTTCGCGACC GCGCCGATCA CCGACTTCCG CGCCATCTCG
CCGCGCTTCG CCCCCGAGGT GCTGCCCGCC AACATGGCGC TGGCCGACCT GGTGCGCAAC
TGGGCGCAAC GCAAGAACGC CACGCCCGGC CAGTTGTCGC TGGCCTGGCT GCTGGCGCAA
AAGCCCTGGA TCGTGCCGAT TCCGGGCACC ACCAACGCGG CCCACATGAC CGAGAACCTG
GGGGCGGCCT CGATCTCGTT CACCGCGCAA GAGCTGCAGC AGCTCAACAC CGCGGTGGCC
GCCATCCGCA TCCAGGGGGA TCGCCTGCCG CCGGCCGTGG CGGTGATGTC GGGCGTCGAG
GCTGCGCCCA AGCGCTGA
|
|---|
| Protein sequence | MSIRPTPMNA DLEGQNQQRR HLMLTAATLG VAPWLLSACA STAGGAEAGR SPGRPQAAGA
RRRLGPLEVF PVGLGCQWRP GATPGVVVDS YSSRFDRPAA IRLIRQAVDQ GVTLIDTAEA
YGPFLSEDIV GEALQGIRDK VVLETKFGFD IDQVTGQRLP GGRNSRPEHI RRVVDAQLRR
LRTDRIDVLI QHRVDPNVPI EDVAGTVKDL IGAGKVRHFG LSEPGLQSVR RAHAVQPLAV
IQNEYSMLWR GPEAQVLPLC EELGIGFVCW SPLGMGFLAG GVRADSRFAT APITDFRAIS
PRFAPEVLPA NMALADLVRN WAQRKNATPG QLSLAWLLAQ KPWIVPIPGT TNAAHMTENL
GAASISFTAQ ELQQLNTAVA AIRIQGDRLP PAVAVMSGVE AAPKR
|
|---|
| |