Gene Lcho_2129 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2129 
Symbol 
ID6161622 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2328259 
End bp2331249 
Gene Length2991 bp 
Protein Length996 aa 
Translation table11 
GC content72% 
IMG OID641664898 
ProductFAD-dependent pyridine nucleotide-disulphide oxidoreductase 
Protein accessionYP_001791161 
Protein GI171058812 
COG category[C] Energy production and conversion 
COG ID[COG1251] NAD(P)H-nitrite reductase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0052941 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCGAACC CGACCGGGGC TGGTGCCGCC GCATGGCAGC CGTTTCCGAA TTTCATGCAG 
ATGAACAGCT ACCTGCCCGG CTGGGCCTGG CGGCTGCTGC GGCTGTGCAG CGTGCTCGGC
GCGCTGGCCG TGGCCGGCCT GCTGGCGCTG CGGCCCGAGC AGGGCCTGCC GCTGTTCTGG
GGCCTGATCG TGCCGGTGCT GCCGCTGGTG TTCATGCTGA CGCCGGGCAT CTGGCGCAAC
GTCTGCCCGC TGGCCAGCAG CAACCAGGCG CCGCGCCGGC TCGGGCTGAT CAAGAAGATC
AACCAGAAGA CGCTCGCCAC CGGCGCGGCG TTTCCGATCG GTATCGGCCT GTTCATCGCC
GCGATCCTGG CGCGCAAGCT GATGTTCAAC ACCAGCGGTG TCGCCACCGC CGCCCTGATC
GTCGGCGCGA TGGTGATGGC GTTTGCCGGC GGCATCGTCT TCAAGGGCAA GAGCGGCTGG
TGCAGCAGCA TCTGCCCGCT GCTGCCGGTG CAGCGTCTCT ACGGCCAGAC CCCGTTCCTG
AAGATCGCCA ACACCCAGTG CGAGCCGTGC GTGGGCTGCG CCAAGAACTG CTACGACTTC
AACCCCGGCT CGGCGTATCT TGCTGACCAG TACGACGCCG ACCCGAGCTA CCGCGACTTC
CGGCGCTTCT TCGCCGGCCT GTTTCCGGGC CTGATCCTGG GCTTCTACCT GGTGCCCGGC
ACCGCGCAGA TCGGCGCCGG CGCGGTGGTG CTGCAGATGC TGCTCTACAT GGCCAGCAGC
CTGACCGTGT TCACGCTGCT CGACCTGCTG CTGAAGTCGA CCCGCAACCG CCTGCCGGTG
GTGTTCGCGG CGCTGGCGAT CAATGTCTAC TACTGGTTCG CGGCGCCGAT CGTGCTCAAC
ACGCTGCAGC AGCTGGGCGC GCCGATCGAC CTGACGCTGG TCGGCGCCGT GCGCGCCGCC
GTGGTGATCG CCAGCCTGGT GTGGATCGCA CGGTCGATCC AGGCCGAGCG ACTGTTCCTG
AACGAGCAGG TGCGCCGTGG CCAGGGCGGC GAGATCCATC TCGCGCCGGT GGTGGTCGAG
ACCGTGCGCC TGCACCGCAA CATCGTGCCG CGCCGGGTCG ATGTCGAGCC GGTGGCATCG
GACGCGCCGG CCGCCAACTC GGCGCGCATC CAGGGTGGCG ACACCCAGCC CGGCGCGCTG
GCGCCGCTCG AGGCAGCGCC GGCCGATGCC GTGGCACGCC CCCCGGCCGC TGCGGCACCC
AAGGCCGGTT CGCGCCCCGA ACTGCGCATC GAGCCCGAGG GCCGCTGCGT GCCGCTGAAA
AAGGGCGCCA GCCTGCTCGA CACCCTCGAG GGCTGCGGCG CGGCGATCCA GGCCGGCTGC
CGCGCCGGCG CCTGTGGCGG CGACCCCATC GCGATCACCG GCGGCGCCGA TTGCCTGGGC
CCGATCGGCG ACACCGAGCG CGCGACGCTG GCCCGCCTGG GCCACGCGTC GAACACCCGC
ATGGCCTGCA TGGCGCGGGT ACGCAATGCC GGTACCGTCA CGGTCGAGCT CAAGCCGCAT
GCCGTCGATG CGCCCGGCGC TGCGCCTGCG CCCACACGCC ACGCCGCACC GGCGGCCGTG
TCGGTCGTGG CGTCGGTCGT GGCGCCGGTG GTAGCCAGGC ACGACCGCTC GATCCGCAGC
GTCGTCATCG TCGGCAACGG CGTGGCCGGC CTGACCGCGG CCGAGCACGT GCGCCGCCAT
CACCCGGATT GCGAGATCCA CCTGATCGCC CGCGAGCGTT ACCTGCCCTA CAACCGCATG
GCGGTCAGCG CGCTGATCAA CCAGCGCTCG GGCATGCAGG GCATGGGCCT GAAGCCCGAC
GCCTGGTACG CCGAACAGCG CATCACGCAC TGGCTCAACA CCCGCGCCAC CGACGTCGAC
ACCACCGGCC GCCAGGTGCA GCTGGCGACC GGCGAGACGC TCGGCTACGA CCGCCTCATC
CTGGCCAACG GCAGCCAGGC CTGGATGCCG CCGGTGGAGG GTTTCGGCAT CGCCGGCTCC
TTCCTGCTGC GCCAGGCCAA CGACGCGATG GCGATCCGCG CCTTCGTGCA GCGCCACGGC
GCGCGCCACG CGGTGGTGGT CGGCGCCGGC CTGCTCGGGC TGGAGGCCGC GGCGTCCTTG
CGGCAGCTGG GCCTGGGCGT GCAGGTGCTG AGCCTGAACG AGCAGGTGCT CGATCGCCAG
ATCGACCGCG CGGCCAGCGA GTTGGTGGTC GCGCACCTGA GCGGCCAGGG CATCGAGCTG
GTCGGCAACG CCAAGCTGCG CCGGGTGGTG CGCAGCGCGG GCCGCATCAG CGCCATCCGG
CTCGAGGACG GCCGCGAGCT GCCCACCGAA CTGCTGGTGG TGTGCGCCGG CACCCGCGCC
GAGCTGACGC TGGCGCACGC CGCCGGCCTG GCCACCGGCC GCGGCATCAC GGTGGACGCG
CAGATGCGCA CCAGCGCCGA ACACGTCTAC GCGGCCGGCG ACGTGGCCGA GTTCGAGGGC
GAACAGTTCG GCCTGTGGGC GATCGCCGTC GCGCAGGGCG AGGTGGCGGC GCGCAGCGCG
CTCGGGCTGG CCGCCCGCTT CGAATCGATC CAGCCGGTGA CGGCGCTCAA GCTGCGTGGC
ATCGAGGTGC GCAGCGCCGG TGCGGCCGGT GCCGGCGGGG CCGGCCAGAG CGAGCTGCTG
TGCGCCGGTT CGCTGGCCGG TGACGAACCC GACGAGGCCG ACGCCGGGCC TGGCTACTGC
AAGCTGGTGG TCGAGGAACA CGCCGGGGGC GACCGCCTGA TCGGCGTCGT GATCGTCGGC
GCGCACGAGA TCGGCGACGA GCTGCTCGAT GCGGTCAAGC GCCGTGCCAG CCTGGCCTCG
CTGCAGTCGT TGCTCGCCGG CCACCGCTGG CTGCTGCAGC CGGCCGAGGT GGCCCAGGCC
CGGGTGGCGC CGACCCGGGG GGCGCCGACC GCGGTTCGGC GTGTCGGCTG A
 
Protein sequence
MSNPTGAGAA AWQPFPNFMQ MNSYLPGWAW RLLRLCSVLG ALAVAGLLAL RPEQGLPLFW 
GLIVPVLPLV FMLTPGIWRN VCPLASSNQA PRRLGLIKKI NQKTLATGAA FPIGIGLFIA
AILARKLMFN TSGVATAALI VGAMVMAFAG GIVFKGKSGW CSSICPLLPV QRLYGQTPFL
KIANTQCEPC VGCAKNCYDF NPGSAYLADQ YDADPSYRDF RRFFAGLFPG LILGFYLVPG
TAQIGAGAVV LQMLLYMASS LTVFTLLDLL LKSTRNRLPV VFAALAINVY YWFAAPIVLN
TLQQLGAPID LTLVGAVRAA VVIASLVWIA RSIQAERLFL NEQVRRGQGG EIHLAPVVVE
TVRLHRNIVP RRVDVEPVAS DAPAANSARI QGGDTQPGAL APLEAAPADA VARPPAAAAP
KAGSRPELRI EPEGRCVPLK KGASLLDTLE GCGAAIQAGC RAGACGGDPI AITGGADCLG
PIGDTERATL ARLGHASNTR MACMARVRNA GTVTVELKPH AVDAPGAAPA PTRHAAPAAV
SVVASVVAPV VARHDRSIRS VVIVGNGVAG LTAAEHVRRH HPDCEIHLIA RERYLPYNRM
AVSALINQRS GMQGMGLKPD AWYAEQRITH WLNTRATDVD TTGRQVQLAT GETLGYDRLI
LANGSQAWMP PVEGFGIAGS FLLRQANDAM AIRAFVQRHG ARHAVVVGAG LLGLEAAASL
RQLGLGVQVL SLNEQVLDRQ IDRAASELVV AHLSGQGIEL VGNAKLRRVV RSAGRISAIR
LEDGRELPTE LLVVCAGTRA ELTLAHAAGL ATGRGITVDA QMRTSAEHVY AAGDVAEFEG
EQFGLWAIAV AQGEVAARSA LGLAARFESI QPVTALKLRG IEVRSAGAAG AGGAGQSELL
CAGSLAGDEP DEADAGPGYC KLVVEEHAGG DRLIGVVIVG AHEIGDELLD AVKRRASLAS
LQSLLAGHRW LLQPAEVAQA RVAPTRGAPT AVRRVG