| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2055 |
|---|
| Symbol | rimO |
|---|
| ID | 6160591 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2234595 |
|---|
| End bp | 2235995 |
|---|
| Gene Length | 1401 bp |
|---|
| Protein Length | 466 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641664824 |
|---|
| Product | ribosomal protein S12 methylthiotransferase |
|---|
| Protein accession | YP_001791087 |
|---|
| Protein GI | 171058738 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.00235641 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATGACC TCGCCATCTC CCTCCCCACG CCGGCCGCTG GCGCTGCCGC ACCGCGCATC
GGCTTCGTGA GCCTCGGCTG CCCGAAGGCG CTGACCGACT CCGAGCTGAT CCTGACGCAG
CTCAGCGCCG AGGGTTACGC CACCAGCAAG ACCTTCCAGG GCGCCGACCT GGTGATCGTC
AACACCTGCG GTTTCATCGA CGACGCGGTG CGCGAAAGCC TCGACACCAT CGGCGAGGCG
CTGGCCGAAA ACGGCAAGGT CATCGTCACC GGCTGCCTGG GCGCCAAGAC CGGCGACGGC
GGTGGCAACC TGGTGCGCCA GATGCACCCG AGCGTGCTGG CCGTCACCGG CCCGCATGCC
ACGCAGGAGG TGATGGACGC GGTGCACCAG CACGTGCCCA AGCCGCACGA TCCGTTCGTC
GACCTGGTGC CGCCCGCGGG CATCAAGCTC ACGCCCAAGC ACTACGCGTA CCTGAAGATC
AGCGAAGGCT GCAACCACCG CTGCTCGTTC TGCATCATCC CGAGCATGCG TGGCGATCTG
GTCTCGCGCC CGATCGGCGA CGTGCTGACC GAGGCGCAGC GCCTGTTCGA AGGCGGCGTC
AAAGAGCTGC TGGTGATCAG CCAGGACACC TCGGCCTACG GCGTCGACGT CAAGTACCGC
ACCGGTTTCT GGGACGGCAA GCCGGTCAAG ACGCGGATGC TCGACCTGGT CGCGCAGCTC
GGCGAGCTGG CCAGGAAACA CGGCGCCTGG GTGCGGCTGC ATTACGTCTA CCCCTACCCG
CACGTCGACG AGGTGCTGCC GCTGATGGCC GAGGGGCTGG TGCTGCCTTA CCTCGACGTG
CCGTTCCAGC ACGCGCACCC GGATGTCCTC AAGCGCATGA AGCGCCCGGC CAGCGGCGAG
CGCAACCTCG AGCGCCTGCT GAAGTGGCGC GAGGCCTGCC CCCAGATCGT GGTGCGCTCG
ACCTTCATCG CCGGTTTCCC GGGCGAGACC GAGGCCGAGT TCGAGTACCT GCTCGACTTC
CTGAAAGAAG CGCAGATCGA CCGCGCCGGC TGCTTCGCCT ACTCGCCGAT CGAAGGCGCG
CCGGCCAATC TGCTCGACGG CGCCTTGCCG GATGCGGTGC GCGAGGAGCG CCGCGCCCGC
TTCATGGCGG TGGCCGAGGC CGTGTCGACC GCCAAGCTGC AGCGCCGCGT CGGATCGAGC
ATGCAGGTGC TGGTCGACAG CGCGCCGGCG ATGGGCCGCA AGGGCGGCGT CGGCCGCTCG
TACGCGGACG CGCCGGAGAT CGACGGCACC GTCAAGATCC TGCCGCCGAG CAAGGCCTCC
AAGACGATGA AGGTGGGCGA GTTCTCGCGC GTGCGCATCG TCGGCTCGCA AGGCCACGAC
CTGATCGGCG AGCTGATCTG A
|
|---|
| Protein sequence | MNDLAISLPT PAAGAAAPRI GFVSLGCPKA LTDSELILTQ LSAEGYATSK TFQGADLVIV
NTCGFIDDAV RESLDTIGEA LAENGKVIVT GCLGAKTGDG GGNLVRQMHP SVLAVTGPHA
TQEVMDAVHQ HVPKPHDPFV DLVPPAGIKL TPKHYAYLKI SEGCNHRCSF CIIPSMRGDL
VSRPIGDVLT EAQRLFEGGV KELLVISQDT SAYGVDVKYR TGFWDGKPVK TRMLDLVAQL
GELARKHGAW VRLHYVYPYP HVDEVLPLMA EGLVLPYLDV PFQHAHPDVL KRMKRPASGE
RNLERLLKWR EACPQIVVRS TFIAGFPGET EAEFEYLLDF LKEAQIDRAG CFAYSPIEGA
PANLLDGALP DAVREERRAR FMAVAEAVST AKLQRRVGSS MQVLVDSAPA MGRKGGVGRS
YADAPEIDGT VKILPPSKAS KTMKVGEFSR VRIVGSQGHD LIGELI
|
|---|
| |