| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2048 |
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| Symbol | |
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| ID | 6163494 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2224095 |
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| End bp | 2227295 |
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| Gene Length | 3201 bp |
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| Protein Length | 1066 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641664817 |
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| Product | CzcA family heavy metal efflux protein |
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| Protein accession | YP_001791080 |
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| Protein GI | 171058731 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.0124783 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGCCC GGCTGATCCG CTGGTCGGTC GCCAACCGAT TCCTGGTGCT GCTGGCCACC
GTACTGCTGA CCGCCTGGGG CGTCTGGGGC CTGCGCAGCA CGCCGATCGA CGCGCTGCCC
GACCTGTCGG ACGTGCAGGT CATCATCCGC ACCAGCTACC CCGGCCAGGC GCCGCAGATC
GTCGAGAACC AGGTGACCTA TCCGCTGGCG ACGACGATGC TGTCGGTGCC GGGCGCCAAG
ACGGTGCGCG GCTTCTCGTT CTTCGGCGAC AGCTTCGTCT ACGTGCTGTT CGACGATGGC
ACCGATCTGT ACTGGGCGCG CTCGCGGGTG CTCGAATACC TCAATCAGGT GCAGGGCCGG
CTGCCGGCCA GCGCCAAGAC CTCGCTCGGG CCCGATGCCA CCGGCGTGGG CTGGATCTTC
CAGTACGCCT TGGTGTGTCG ACCCCCAGGC GCTGCGCGCC AGCCCCCCGA GGGGGCGAGC
ACCGGGCTTG GGGCGGCCCG GCGCCCGGTA CTCAGCGATC GCGGTTGTGA ACAGGACCTC
TCGCAGCTGC GCACGCTGCA GGACTGGTTC CTCAAATACG AACTCAAGAG CCTGCCCGAC
GTCGCCGAGG TGGCGAGCGT GGGCGGCATG GTGCGGCAGT ACCAGGTCGT GCTCGACCCG
ACCAAGCTCG CCGCCTACGG CATCACCTAC GCCCAGGTGC GCGACGCGCT GATGGCCGGC
AATCAGGAGA CCGGCGGCTC GGTGCTGGAG CTGGCCGAGG TCGAATACAT GGTGCGCGCC
AGCGGCTACC TGCGTTCGCT CGACGACTTC CGCACCATCC CGCTGGCCGC GCGTGGCGGC
ATCCCGGTCA AGCTGGGCGA TGTCGCCACG GTGCAAATCG GCCCCGAGAT GCGGCGCGGC
ATCGCCGAGC TCGACGGCGA AGGCGAGGTC GCCGGTGGCG TCGTGATCCT GCGTTCGGGC
AAGAACGCGC AGTCGACCAT CACGGCGGTC AAGGCCAAGC TGGCCGAGCT GCAGAAGAGC
CTGCCCGCGG GCGTCGAGAT CGTCACCACC TACGACCGCA GCGCGCTGAT CGAGCGGGCG
ATCGAGAACC TCACGCACAA GCTGATCGAG GAGTTCATCG TCGTGGCCGC GGTCTGCGCG
CTGTTCCTGT GGCACCTGCG CTCGGCGCTG GTGGCGATCA TCGCGTTGCC GCTGGGCGTG
CTGACGGCAT TCCTGGTGAT GCGCTACCAG GGCATCAACG CCAACATCAT GTCGCTGGGC
GGCATCGCGA TCGCGATCGG CGCGATGGTC GACGCGGCGG TGGTGATGAT CGAAAACGCC
CACAAGAAGC TCGAAGCCTG GCAACACGCC CACCCCGATC AAGTTCTCGA AGGCGAGGAA
CGCTGGCAGG TCATGACCGA CGCGGCGGTC GAGGTCGGCC CGGCGCTGTT CTTCTCGCTG
CTGATCATCA CGCTGTCGTT CATCCCGGTG TTCACGCTCG AAGCGCAGGA GGGCCGGCTG
TTCGGCCCGC TGGCGTTCAC CAAGACCTAC GCGATGGCGG CCTCGGCCGC GCTGTCGGTC
ACGCTGATCC CGGTGCTGAT GGGCTACTGG ATCCGCGGGC GCATCCCCGA CGAGCAGAAG
AACCCGATCA CCCGCGCGCT GATCGCCGTC TACCGGCCCG CGCTCGAATG GGTCTTGCGC
TGGCCGAAGG CGACGCTGGC CGCCGCGCTG CTGGTGCTGG CCACGACCGC CTGGCCGTTG
ATGCAGCTGG GTGGCGAGTT CCTGCCCAAG CTCGACGAGG GCGATCTGCT CTACATGCCG
TCGGCGCTGC CGGGGCTGTC GGCGCAGAAG GCCGGCGAGC TGCTGCAGCT GACCAACCGC
ATGATCAAGA CCGTGCCCGA GGTCGAGCGG GTGTTCGGCA AGGCCGGCCG CGCCGAGAGC
GCCACCGATC CGGCGCCGAT CGAGATGTTC GAGACCACCA TCCAGCTCAA GCCGCGCGAG
CAGTGGCGCG CCGGCATGAC ACCCGACAAG CTGGTCGAGG AACTGGATCG CGCCGTCAAG
GTGCCGGGGC TGTCGAACCT GTGGGTGCCG CCGATCCGCA ACCGCATCGA CATGCTCGCC
ACCGGCATCA AGAGCCCCAT CGGCGTCAAG GTGACGGGCG GTGATCTGGC GGCGATCGAC
CGGGTGGCCG CCCGCATCGA GCAGGTCGCC AAGGGCGTGC CGGGTGTGTC GTCGGCGCTG
GCCGAGCGGC TCACCGGCGG GCGTTATGTC GACGTGCAGA TCGACCGCGC CGCGGCTTCG
CGTTACGGCC TCAACATCGC CGACGTGCAG GCGCTGGTGG CCGGCGCGAT CGGCGGCGAG
AACGTCACCG AGACCATCGA GGGCCGGGCG CGTTTCCCGG TCAACCTGCG CTACCCGCGT
GAATGGCGCG ACACGCCGCA GCGCCTGGCG CAGCTGCCGA TCCTGACGCC GATGGGCCAG
CAGATCACGC TGGGCTCGGT CGCGAGGGTG GCGATCAGCG ACGGCCCGCC GATGCTCAAG
AGCGAAAACG CCCGGCCGTC GGGCTGGGTC TATGTGGACG TGCGCGGCCG TGATCTGGCC
GCGGTGGCCA ACGACCTGCG CACGGCGGTG ACGCGTGACG TGCCGCTCGA AGCCGGCATG
AGCGTGGCGT ATTCGGGCCA GTTCGAGTAC CTGGAGCGCG CCAACGCCCG CCTCAAGGTG
GTGGTGCCGG CGACGCTCTT GATCATCTTC GTGCTGCTGT ACCTGACCTT CAGCCGCTTC
GACGAGGCGC TGCTGATCAT GGCGACGCTG CCGTTTGCGC TCACCGGCGG GGTGTGGTTC
CTGTACCTGC TGGGCTACCA GATGTCGGTC GCGACCGGCG TGGGTTTCAT CGCGCTGGCG
GGCGTGGCGG CCGAGTTCGG CGTGGTGATG CTGCTGTACC TCAAGCACGC GCTGCAGGAT
CGCCTGGCAG CCGGTGCGAG CCCGTCGGCC GCGCTGGTCG ACGATGCGAT CCGCGAGGGC
GCGGTGCTGC GCGTGCGGCC CAAGGCGATG ACGGTGGCGG TGATCCTGGC CGGCCTGGTG
CCGATCGTCT GGAGCAGCGG CACCGGCTCG GAGGTGATGA GCCGCATCGC CGCGCCGATG
CTGGGCGGCA TGGTGACGGC GCCGCTGCTG TCGCTGTTCA TCGTGCCGGC GGTCTACGCG
CTGCTGCGCC GGCGTAGCTG A
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| Protein sequence | MIARLIRWSV ANRFLVLLAT VLLTAWGVWG LRSTPIDALP DLSDVQVIIR TSYPGQAPQI
VENQVTYPLA TTMLSVPGAK TVRGFSFFGD SFVYVLFDDG TDLYWARSRV LEYLNQVQGR
LPASAKTSLG PDATGVGWIF QYALVCRPPG AARQPPEGAS TGLGAARRPV LSDRGCEQDL
SQLRTLQDWF LKYELKSLPD VAEVASVGGM VRQYQVVLDP TKLAAYGITY AQVRDALMAG
NQETGGSVLE LAEVEYMVRA SGYLRSLDDF RTIPLAARGG IPVKLGDVAT VQIGPEMRRG
IAELDGEGEV AGGVVILRSG KNAQSTITAV KAKLAELQKS LPAGVEIVTT YDRSALIERA
IENLTHKLIE EFIVVAAVCA LFLWHLRSAL VAIIALPLGV LTAFLVMRYQ GINANIMSLG
GIAIAIGAMV DAAVVMIENA HKKLEAWQHA HPDQVLEGEE RWQVMTDAAV EVGPALFFSL
LIITLSFIPV FTLEAQEGRL FGPLAFTKTY AMAASAALSV TLIPVLMGYW IRGRIPDEQK
NPITRALIAV YRPALEWVLR WPKATLAAAL LVLATTAWPL MQLGGEFLPK LDEGDLLYMP
SALPGLSAQK AGELLQLTNR MIKTVPEVER VFGKAGRAES ATDPAPIEMF ETTIQLKPRE
QWRAGMTPDK LVEELDRAVK VPGLSNLWVP PIRNRIDMLA TGIKSPIGVK VTGGDLAAID
RVAARIEQVA KGVPGVSSAL AERLTGGRYV DVQIDRAAAS RYGLNIADVQ ALVAGAIGGE
NVTETIEGRA RFPVNLRYPR EWRDTPQRLA QLPILTPMGQ QITLGSVARV AISDGPPMLK
SENARPSGWV YVDVRGRDLA AVANDLRTAV TRDVPLEAGM SVAYSGQFEY LERANARLKV
VVPATLLIIF VLLYLTFSRF DEALLIMATL PFALTGGVWF LYLLGYQMSV ATGVGFIALA
GVAAEFGVVM LLYLKHALQD RLAAGASPSA ALVDDAIREG AVLRVRPKAM TVAVILAGLV
PIVWSSGTGS EVMSRIAAPM LGGMVTAPLL SLFIVPAVYA LLRRRS
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