| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2006 |
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| Symbol | |
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| ID | 6162367 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2173723 |
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| End bp | 2177190 |
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| Gene Length | 3468 bp |
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| Protein Length | 1155 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641664775 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001791038 |
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| Protein GI | 171058689 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.000316908 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTGCTTC CGAACATCGC ACCCGGCAAA CGCTTTGCCG TTTCACGCCC GATCGGCTCC
GCCGATGCGC TCTTGCTGGC CCGCTTCGCC CAGGCCCGGG TGGCCAGCCG GCAACTGCTG
GCCGTGATCG TGGCCGAGCC CGCCGACGCC CAGCGGCTGC CCGACGAACT GGCTTTCTTT
GCCCCTGAAC TGCGCGTGGC GGTGTTCCCC GACTGGGAAA CCCTGCCCTA CGACAGCTTC
AGCCCGCACC AGGACCTGAT CTCCGAGCGC CTGGCCACGC TCTGGCGGGT GCGCTCGGGC
GAGGTCGACG TGGTGCTGCT GCCCGCCACC ACGGCGCTGA CCCGGCTGGC GCCGCCGTCG
TTCCTGGCCG GCTACACCTT CCATTTCAAG CAGAAGCAGA AACTCGATGA CGCCGCGCTC
AAGGCACAGC TGACGCTGGC GGGCTATCAG CACGTCAGCC AGGTGGTGTC GCCGGGCGAA
TACGCCGTGC GCGGCAGCCT GATCGACCTG TTCCCGATGG GCTCGCTGGT GCCCTACCGG
GTCGACCTGT TCGACAACGA GGTCGATTCG ATCCGCGTCT TCAACCCCGA CAGCCAGCGC
AGCCTCTACC CGGTGCCCGA GGTGCGGCTG CTGCCCGGGC GCGAGTTCCC GATGGACGAC
GCCGGGCGGC AGGCCTTCCG GGCCCGCTGG CGCGAAAAGA TGGACGGCGA CCCGAGCAAG
GCGCGCATCT ACAAGGACAT GGCCTCGGGC ATCGCCACCG CCGGCATCGA GTACTACCTG
CCGCTGTTCT TCGAGCAGCC GGCCACCTTC TTCGACTACC TCGGCGACGC CGCCGCGCTG
GTGCTGCACG GCGAGGTCGA CGAGGCGCTG GCGCGTTTCT GGGGCGAAAC CCGCGAGCGC
CACAAGTTCC TGCGCCACGA CCCCGAGCGG CCGGTGCTGC CGCCCGAGGA CATCTACCTG
CGCCAGGAAG AATTCTTCGC GCGGTGCAAC CAGCACGCCC AGCTGTCGAT CCGCGGCAAC
GACCCCGTCG AATGGGCCCG GCCGCTGCCC GACCTGAGCG TGATCCGCGG CGGCACCGAT
CCGCTGCAGC GCCTGGAGCA GCAGCTCGAG AAGATCCGCA GCCAGAAGAA CCGGCTGCTG
ATCGTGGCCG AAAGCGCCGG CCGGCGCGAG AGCCTGCTCG AACTGCTGCG CGACCACCGG
CTGGAGCCGC CGCCGATCGA CGGCCTGTCG GCCTTCATCG CCAGCGACCA CCCGTACGCG
ATCGCCACCG CGCCGCTGGC CGCCGGTTTC TTCTGGACCG ACGCGACGGC CGACTTCGGC
ATCCAGTTCG TCACCGAAAC CGAACTCTTC GACGCCACGC CCACCGCACG CCGGCGCCGC
AAGCAGGAGC AGACCAGCGA CGTCGAGGCG CTGATCAAGG ACCTGTCGGA GCTGAAGGTC
GGCGACCCGG TGGTGCACGC CAACCACGGC ATCGGCCGCT ACCAGGGGCT GGTCAGCATC
GACCTGGGCG AGGGGCCGAC CGAGTTCCTG TTCCTCGAAT ACGCCGACCA GGCCACGCTC
TACGTGCCGG TGTCGCAGCT GCAGCTGATC AGCCGCTACA CCGGCGTCAG CGCCGAAGAG
GCGCCGCTGC ACAAGCTCGG TTCCGGCCAG TGGGAAAAGG CCAAGCGCAA GGCGGCCGAG
CAGGTGCGCG ACGCCGCCGC CGAGCTGCTG AATCTGTACG CGCGCCGCGC TTCGCGCGAA
GGGTTTGCAT TCCGTTTCTC GCCGCAGGAT TACGAGGCGT TTGCGGCCAG CTTCGGCTTC
GAGGAAACCG CCGACCAGAA CGCCGCGATC CACGCCGTCA TCCAGGACAT GATCAGCCCC
AGACCGATGG ATCGGCTGGT CTGCGGCGAC GTCGGTTTCG GCAAGACCGA GGTGGCCTTG
CGCGCCGCCT TCGTGGCGGT CACCGGCGGC AAGCAGGTGG CGCTGCTCGC GCCGACCACG
CTGCTGGCCG AGCAGCACTA CCAGACGCTG GCCGACCGCT TCGCGCAGTG GCCGGTCAAG
GTGGCCGAGA TCAGCCGCTT CCGCTCGACC AAGGAGGTCA AGGCCACGCT CGACGGCCTG
GCCGCCGGCA CGGTCGACAT CGTGGTGGGC ACGCACAAGC TGCTGAGCCC GGACTCGAAG
TTCAAGAACC TGGGCCTCCT GATCATCGAC GAGGAACACC GTTTCGGCGT GCGCCACAAG
GAGCAGATGA AGGCGCTGCG CGCCGAGGTC GACGTGCTCA CGCTCACCGC CACGCCGATC
CCGCGCACGC TGGGCATGGC GCTCGAAGGG CTGCGAGATC TGAGCGTGAT CGCCACCGCG
CCGCAGCGGC GCCTCGCGAT CAAGACCTTC GTGCGCAACG AGACCGGCGG CACGATCCGC
GAGGCCGTGA TGCGCGAGTT GAAGCGCGGC GGCCAGGTCT ACTTCCTGCA CAACGAGGTC
GACACGATCG AGAACCGGCG CCAGAAGCTC GAGGAAATGC TGCCCGAGGC GCGCATCGCG
GTCGCCCACG GCCAGATGCC CGAGCGCGAG CTCGAGCGCG TGATGCGCGA CTTCGTGGCC
CAGCGCCACA ACGTGCTGCT GTGCTCGACC ATCATCGAGA CCGGCATCGA CGTGCCGAGC
GCCAACACCA TCGTCATCAG CCGCGCCGAC AAGTTCGGCC TGGCGCAGCT GCACCAGCTG
CGCGGGCGCG TCGGTCGCAG CCACCACCAG GCCTACGCCT ACCTGCTGGT GCCCGACACC
GAGGGCCTGA CCAAGCAGGC GCAGCAGCGC CTGGACGCCA TCCAGGCGAT GGAGGAACTG
GGTTCGGGCT TCTACCTGGC GATGCACGAC CTGGAGATCC GCGGCGCCGG CGAGGTGCTG
GGCGACAACC AGAGCGGCAA CATGATGGAG GTCGGCTTCC AGCTCTACAA CGAGATGCTG
GCCGAGGCGG TGCGGGCGAT GAAGGCCGGC GAGGAGCCCG ACCTGCTGTC ACCCACCGGC
TTCTTCGGCG CCGCCACCGA GGTCAACCTG CACGCCCCCG CGCTGCTGCC CGACAGCTAC
TGCGGCGACG TGCACGTGCG CCTGAACCTC TACAAGCGCC TGGCCACGGT CGACAGGCTC
GACAAGATCG ACAGCCTGCT CGAGGAGATC GTCGACCGCT TCGGCAAGCT GCCCGCCCAG
GGCCAGACGC TGTTCGACCT GCACCGCCTG CGGGTGCAGG CGCGGCCCTA CGGCGTGGTC
AAGATCGACG CGGGCCCGGC GGTGATGAAC ATCCATTTCA AGCCGAACCC GCCGATCGAT
CCGATGCGCA TCATCGAGCT GGTGCAGAAG AACCGCAACG TCAAGCTCGC CGGCAACGAC
AAGCTGCGCA TCGACCGGGC CTACCCCGAC GCCAAGGACC GGGCGCAGTA CGTGCGCGAC
GTGCTGCGCG CACTCGGCCA GCCGCAGGCC AAGGCGGCCG CCACCTGA
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| Protein sequence | MLLPNIAPGK RFAVSRPIGS ADALLLARFA QARVASRQLL AVIVAEPADA QRLPDELAFF
APELRVAVFP DWETLPYDSF SPHQDLISER LATLWRVRSG EVDVVLLPAT TALTRLAPPS
FLAGYTFHFK QKQKLDDAAL KAQLTLAGYQ HVSQVVSPGE YAVRGSLIDL FPMGSLVPYR
VDLFDNEVDS IRVFNPDSQR SLYPVPEVRL LPGREFPMDD AGRQAFRARW REKMDGDPSK
ARIYKDMASG IATAGIEYYL PLFFEQPATF FDYLGDAAAL VLHGEVDEAL ARFWGETRER
HKFLRHDPER PVLPPEDIYL RQEEFFARCN QHAQLSIRGN DPVEWARPLP DLSVIRGGTD
PLQRLEQQLE KIRSQKNRLL IVAESAGRRE SLLELLRDHR LEPPPIDGLS AFIASDHPYA
IATAPLAAGF FWTDATADFG IQFVTETELF DATPTARRRR KQEQTSDVEA LIKDLSELKV
GDPVVHANHG IGRYQGLVSI DLGEGPTEFL FLEYADQATL YVPVSQLQLI SRYTGVSAEE
APLHKLGSGQ WEKAKRKAAE QVRDAAAELL NLYARRASRE GFAFRFSPQD YEAFAASFGF
EETADQNAAI HAVIQDMISP RPMDRLVCGD VGFGKTEVAL RAAFVAVTGG KQVALLAPTT
LLAEQHYQTL ADRFAQWPVK VAEISRFRST KEVKATLDGL AAGTVDIVVG THKLLSPDSK
FKNLGLLIID EEHRFGVRHK EQMKALRAEV DVLTLTATPI PRTLGMALEG LRDLSVIATA
PQRRLAIKTF VRNETGGTIR EAVMRELKRG GQVYFLHNEV DTIENRRQKL EEMLPEARIA
VAHGQMPERE LERVMRDFVA QRHNVLLCST IIETGIDVPS ANTIVISRAD KFGLAQLHQL
RGRVGRSHHQ AYAYLLVPDT EGLTKQAQQR LDAIQAMEEL GSGFYLAMHD LEIRGAGEVL
GDNQSGNMME VGFQLYNEML AEAVRAMKAG EEPDLLSPTG FFGAATEVNL HAPALLPDSY
CGDVHVRLNL YKRLATVDRL DKIDSLLEEI VDRFGKLPAQ GQTLFDLHRL RVQARPYGVV
KIDAGPAVMN IHFKPNPPID PMRIIELVQK NRNVKLAGND KLRIDRAYPD AKDRAQYVRD
VLRALGQPQA KAAAT
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