| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2002 |
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| Symbol | |
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| ID | 6162408 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2169080 |
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| End bp | 2170384 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664771 |
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| Product | 4-aminobutyrate aminotransferase |
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| Protein accession | YP_001791034 |
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| Protein GI | 171058685 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
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| TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0000607298 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAACGTG AACCCCATGC CACCAACGCC GCGCTGATGG CGCGCCGCCG TGCCGCCCTG
CCCGCCGGCC TCGGCCAGAC CTACGAGGTG TTCGTCGACC ACGCCGAAAA TGCCGAGGTC
TGGGACGTCG AAGGCCGGCG CCTGATCGAC TTCGCCGGTG GCATCGCGGT GCTCAACACC
GGCCACCGTC ACCCGAAGGT GATCGCCGCG GTCAAGGCGC AGCTGGACCG CCAGCACCAC
ACCTGCTTCC AGGTGCTGGC CTACGAGTCG TACGTGGAAC TGGCCGAACG CCTGATCGCC
AGGACGCCGG GCGATTTCGC CAAGAAGGCG TTTTTCCTGA GCAGCGGCGC CGAGGCGGTC
GAAAACGCCA TCAAGATCGC GCGCGCTGCC ACCCGCCGCG GCGCGGTCAT CGCCTTCGGC
GGCGGCTTCC ACGGCCGCAC GATGATGGGC ATGGCGCTGA CCGGCAAGGT GGCGCCGTAC
AAGACCGGCT TCGGGCCGTT TCCGGCCGAG ATCTACCACG CCAAGTTCCC GAACCCGTTG
CATGGCGTGA GCACGGCCGA TGCGCTGGCG TCGGTGGAGG CGATCTTCAA GTACGACGTC
GAGGCCGCAC GGGTGGCGGC CATCATCCTG GAGCCGGTGC AGGGCGAAGG CGGCTTCTAC
GTCGCGCCGA TCGACTTCGT GCGCGGCCTG CGTGCGATCT GCGACCAGCA CGGCACCGTG
CTGATCGTCG ACGAGGTCCA GACCGGCGCC GGCCGCACCG GCACCTGGCT GGCCTGCGAG
CAGTGGGTGG CCGCGGGCGT GGGCGCGCCC GACATCGTGA CGATGGCCAA GTCGATGGCC
GGCGGTTTCC CGATCTCGGC CGTGATCGGC CGCGCCGAGC TGATGGACGC GCCCGGCCCC
GGCGGCCTGG GCGGCACCTA TGCCGGCAGC CCTTTGGGTT GCGCCGCGGC GCTGGCAGTG
CTGGAGGTGT TCGAGGAAGA AAACCTGCTG GAGCGCAGCC GCGACGTGGG CAAACGCCTG
ACCGCCGGCC TTCAGGCCAT CGCCGCACGC CACAAGAGCA TCCAGGACGT GCGCGGGCCG
GGCGCGATGG TGGCGATCGA GCTGTTCAAG GATGGCGACC TTCACCAGCC GGATGCCGAC
CTGACCAAAC GCATCTGCAC CGAGGCGATC CGGCGTGGCC TGGTGCTGCT GAGCTGCGGC
GTCCACGCCA ACGTGATCCG CATCCTGGTG CCGCTGACGG CCAGCGATGC GGTGATCGAC
GAAGGCCTGG CGATCCTCGC CGCGAGCTTC GACGCGGTGG CCTGA
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| Protein sequence | MQREPHATNA ALMARRRAAL PAGLGQTYEV FVDHAENAEV WDVEGRRLID FAGGIAVLNT
GHRHPKVIAA VKAQLDRQHH TCFQVLAYES YVELAERLIA RTPGDFAKKA FFLSSGAEAV
ENAIKIARAA TRRGAVIAFG GGFHGRTMMG MALTGKVAPY KTGFGPFPAE IYHAKFPNPL
HGVSTADALA SVEAIFKYDV EAARVAAIIL EPVQGEGGFY VAPIDFVRGL RAICDQHGTV
LIVDEVQTGA GRTGTWLACE QWVAAGVGAP DIVTMAKSMA GGFPISAVIG RAELMDAPGP
GGLGGTYAGS PLGCAAALAV LEVFEEENLL ERSRDVGKRL TAGLQAIAAR HKSIQDVRGP
GAMVAIELFK DGDLHQPDAD LTKRICTEAI RRGLVLLSCG VHANVIRILV PLTASDAVID
EGLAILAASF DAVA
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