| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2001 |
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| Symbol | alaS |
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| ID | 6162407 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2166358 |
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| End bp | 2168985 |
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| Gene Length | 2628 bp |
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| Protein Length | 875 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641664770 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_001791033 |
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| Protein GI | 171058684 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00000779189 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAGCCT CCGAAATCCG TTCCACCTTC CTGAAGTTCT TCGAGTCCAA GGGCCACCAG
ATCGTGGGCT CCAGCCCCGT GGTGCCCGGC GACGACCCGA CGCTGCTGTT CACCAACGCC
GGCATGAACC AGTTCAAGGA CGTCTTCCTG GGCTTCGACA AGCGCCCCTA CAGTCGCGCC
ACCACCAGCC AGAAGTGCAT CCGCGCCGGC GGCAAGCACA ACGACCTCGA CAACGTCGGC
TACACCGCGC GCCACCACAC GTTCTTCGAG ATGCTGGGCA ACTTCAGCTT CGGCGACTAC
TTCAAGCACG ACGCCATCAG CTACGCCTGG GAGCTGCTGA CCGAACACTT CAAGCTGCCG
AAGGACAAGC TCTGGGTCAC CGTCTACTCC GAGGACGACG AGGCCTACGA GATCTGGAAC
AAGGTGGTGG GCGTGCCCGC CGAGCGCATC GTGCGCATCG GCGACAACAA GGGCGCGCGC
TACATGTCCG ACAACTTCTG GATGATGGGC GACACCGGCC CCTGCGGTCC GTGCACCGAG
ATCTTCTTCG ACCACGGCGA AGGCATCCCC GGCGGCCCGC CGGGCAGCCC CGATGAAGAC
GGCGACCGCT ACATCGAGAT CTGGAACAAC GTCTTCATGC AGTTCAACCG CACCGAAGAC
GGTGTGATGC ACAAGCTGCC CAAGCCGAGC GTGGACACCG GCATGGGCCT GGAGCGCATC
ACCGCGGTGC TGCAGCATGT GCACAGCAAC TACGAGATCG ACCTGTTCGT CGCGCTGCTG
GCCGCGGCCA AGGCGGCCGT CGAGAGCGCC GGCGGCAAGG ACGTCGACCC CGAATCCCCG
AGCCTGAAGG TCATCGCCGA CCACATCCGC GCCTGCTCGT TCACCATCGT CGACGGCGTG
ATCCCCGGCA ACGAAGGCCG CGGCTACGTG CTGCGCCGCA TCGCCCGCCG CGCCATCCGC
CACGGCTACA AGCTGGGTGC GCGCACGCCG TTCTTCCACA AGATCGTGGC CGAGCTGGTG
GCGCAGATGG GCGAGGCCTA TCCGGAGCTG CGTGCAGCCC AGGCGCGTGT CACCGAGGTG
CTGAAGCAGG AAGAAGAGCG CTTCTTCCAG ACCATCCAGC ACGGCATGGA GATCCTCGAG
CACGCGCTGG CCGGTGGCAC GAAGCAGGTC GACGGCGAGA CCGCCTTCAA GCTGCACGAC
ACCTACGGCT TCCCGGTCGA CCTGACCGCC GACGTCTGCC GCGAACGTGG CGTGACGGTC
GACCAGGCCG GCTTCGACGC CGCCATGGAG CACCAGCGTT CGCAGGCGCG CGCCGCCGGC
AAGTTCAAGA TGGCCGCCGG CCTCGCCTAC AGCGGCGCGC CGACCGCGTT CCACGGTTAC
GAGCACCTCG TCTGCGAGAC CTCGAAGGTG GTCGCGATCT ACGTCGACGG CACCCCGGTC
GATGCGGCGC AAGCCGGTGA CGACGCGGCC ATCGTGCTCG ACCACACCCC GTTCTACGCC
GAGAGCGGCG GCCAGGCCGG CGACAGCGGC GAGCTGCGCA ACGGCAGCAC CCGCGTGGTG
GTGGCCGACA CGTTCAAGAT CCAGGCCGAC GTGTTCGGCC ACCACGGCCG CATCGTCGAA
GGCAGCGTCA AGGTCGGCGA CAGCTTCGTC GCCAAGGTCG ACGCCGAACT GCGGGCCAAG
ACCGTGCGCA ACCACAGCGC CACCCACCTG ATGCACAAGG CGCTGCGCGA GGTGCTGGGC
GCGCATGTGC AGCAGAAGGG TTCGCTCGTC AACGCCGAGC GCACCCGCTT CGACTTCGCC
CACAACGCGC CGGTGAGCGA CGCGCAGATC CGCCAGGTCG AGGCGATCGT CAACGCCGAG
ATCCTGGCCA ACGCCGCGGC CTCGGCGCAG GTGATGGCGC TCGACGACGC GCAGAAGAGC
GGCGCGATGA TGCTGTTCGG CGAGAAGTAC GGTGAGACCG TGCGCGTGCT GAGCATCGGT
TCGAGCAAGG AACTGTGTGG CGGCACACAC GTCAAGGCCA CCGGCGACAT CGGCCTGTTC
AAGGTGGTGG CCGAGAGCGG CGTGGCCGCC GGCATCCGCC GCATCGAGGC GATCACAGGC
GACAACGCGC TCGCCTATCT GCAGAGTCTG GAGTCGACCG TCAACGGCGT GGCCAGCGCG
CTGAAGTCGG CGGTGCCGGA GGTGCCGGCG CGCATCAGCG GCCTGCAGGA TCAGGTGCGT
GCGCTCGAGA AGGAGCTGGC TGCGCTCAAG GGCAAGCTGG CGTCATCGCA GGGCGACAGC
CTGCTGGCGC AAACGGTCGA CATCAACGGC TTGAAGGTGC TGGCGGTCGT GCTCGAAGGC
GCCGATGCGG CCACCTTGCG CACGACGATG GACCAGCTCA AGAACAAGCT CAAGACCGCG
GCCATCGTGC TGGCGGCGGT CGACGGCGGC AAGGTTCAGT TGGCTGCGGG CGTGACGGCC
GATTCGACGG CCAAGGTCAA GGCCGGCGAG CTGGTCAACT TCGTCGCCCA GCAGGTGGGT
GGCAAGGGCG GCGGCAAGCC GGACATGGCG ATGGCCGGCG GCACCGACCC GAGCAAGCTG
GCTGCTGCGC TGGCCAGCGT GCCGGGCTGG GTCGGCGAGC GGGTCTGA
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| Protein sequence | MKASEIRSTF LKFFESKGHQ IVGSSPVVPG DDPTLLFTNA GMNQFKDVFL GFDKRPYSRA
TTSQKCIRAG GKHNDLDNVG YTARHHTFFE MLGNFSFGDY FKHDAISYAW ELLTEHFKLP
KDKLWVTVYS EDDEAYEIWN KVVGVPAERI VRIGDNKGAR YMSDNFWMMG DTGPCGPCTE
IFFDHGEGIP GGPPGSPDED GDRYIEIWNN VFMQFNRTED GVMHKLPKPS VDTGMGLERI
TAVLQHVHSN YEIDLFVALL AAAKAAVESA GGKDVDPESP SLKVIADHIR ACSFTIVDGV
IPGNEGRGYV LRRIARRAIR HGYKLGARTP FFHKIVAELV AQMGEAYPEL RAAQARVTEV
LKQEEERFFQ TIQHGMEILE HALAGGTKQV DGETAFKLHD TYGFPVDLTA DVCRERGVTV
DQAGFDAAME HQRSQARAAG KFKMAAGLAY SGAPTAFHGY EHLVCETSKV VAIYVDGTPV
DAAQAGDDAA IVLDHTPFYA ESGGQAGDSG ELRNGSTRVV VADTFKIQAD VFGHHGRIVE
GSVKVGDSFV AKVDAELRAK TVRNHSATHL MHKALREVLG AHVQQKGSLV NAERTRFDFA
HNAPVSDAQI RQVEAIVNAE ILANAAASAQ VMALDDAQKS GAMMLFGEKY GETVRVLSIG
SSKELCGGTH VKATGDIGLF KVVAESGVAA GIRRIEAITG DNALAYLQSL ESTVNGVASA
LKSAVPEVPA RISGLQDQVR ALEKELAALK GKLASSQGDS LLAQTVDING LKVLAVVLEG
ADAATLRTTM DQLKNKLKTA AIVLAAVDGG KVQLAAGVTA DSTAKVKAGE LVNFVAQQVG
GKGGGKPDMA MAGGTDPSKL AAALASVPGW VGERV
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