Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1995 |
Symbol | |
ID | 6163243 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 2162359 |
End bp | 2162952 |
Gene Length | 594 bp |
Protein Length | 197 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641664764 |
Product | electron transport protein SCO1/SenC |
Protein accession | YP_001791027 |
Protein GI | 171058678 |
COG category | [R] General function prediction only |
COG ID | [COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.000000392946 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCTGCATC GACGTCGTTT TCAACTGAGC CTGCTGGCTG CCGGCGTGCT GGCGCTGGCC GGCTGCAAGG ACGCCCCGCC GCCGTTCAAG AACCTGGACA TCACCGGCTC CGACTACGCC CGCAGCTTCG ACCTGCAGGC GCCCGATGGC AGGAACCGCT CGCTGGCCGA TTTCAAGGGC CGGCTGGTGA TGGTGTTCTT CGGCTTCACG CAATGCCCGG ACGTCTGTCC GACCGCACTC AGCCGCGCCG TTGCGGTGCG GCAGATGCTG GGTGCGGACG CCGAGCGCCT GCAGGTGATC TTCATCACCG TCGACCCCGA GCGCGACACC GCCGAACTGC TGTCGCAGTA CATGGCCGCG TTCGACCCGA GCTTCCTGGC CCTGCGCGGC GACCTGGTGC GCACGACCGA GGTGGCGCGC GAGTTCAAGG TGTTCTTCAA CAAGGTGCCC ACCGGTTCCT CGTACACCAT GGACCACACC GCCTTGTCGT ACGTGTTCGA CACCCAGGGC CGCCTGCGCC TGGCGGTGCG GCATTCGCAG GGCGCCGAAG ACGTGGCGCA CGACCTGAAG CTGCTGCTGC ACGAATCGAC CTGA
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Protein sequence | MLHRRRFQLS LLAAGVLALA GCKDAPPPFK NLDITGSDYA RSFDLQAPDG RNRSLADFKG RLVMVFFGFT QCPDVCPTAL SRAVAVRQML GADAERLQVI FITVDPERDT AELLSQYMAA FDPSFLALRG DLVRTTEVAR EFKVFFNKVP TGSSYTMDHT ALSYVFDTQG RLRLAVRHSQ GAEDVAHDLK LLLHEST
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