Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1960 |
Symbol | |
ID | 6161749 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2124287 |
End bp | 2125855 |
Gene Length | 1569 bp |
Protein Length | 522 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641664729 |
Product | hypothetical protein |
Protein accession | YP_001790992 |
Protein GI | 171058643 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3593] Predicted ATP-dependent endonuclease of the OLD family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGTAACAA TAAGACGATT GGTGCTTAAG AATTTCAAGC GCTTCAGGAC GCTGGAGCTG GAATTCGACG GTGAGCTGAA CATCCTGGTG GGCGGCAACG AGGCTGGCAA AAGTTCGGTG CTGCAGGCGA TGGAAATCGT GCTCAGCGCC AGCCGCAGCA AGGTCGAGAG CATCGGAATC GAAGCCCTGT TCAACGCCGA CTGCATTGCG GAGTTCTTGG CCGGTGGCCG CAAGGTCGCA GACCTGCCCG AGCTATTGAT TGAAGTCTAT TTCGATGACC TGCCGGGGCG CCATGACCTA GATGGCCGTA ACAATAGCAA AGGCGTCGAC CACCTAGGCA TCAAGATGGT GTGCCGGCCG GCCGACGAGT ACACGCGGGA GGTCCAGGCG ATCCTGGCCG AGAAGCACGA CAACTTCCCG TTCGAGTACT ACGGCATTCA CTTCCAGACG TTTTCCGACG AGGCGGTCTT TCCTCACAAG AAGCCGCTGC GGCACCTGCT GATCGACAGC TCGCAGATCA ACAATGAGTA CGCCACGCGC GAATACACGC GCGCCATGTA CGCCGCGCAT GCGACCGTCG CGCAGCGCAA CCAGCACGGC TTCGAGTACC GCAAGGCCAA GGCAAACTTT AGGGATAAAG CCTTCAAGGC GATGAACGAA GCGCTGAAGG ACTACAAGTT TGATGTCCGT ACGAGCCCCA AGGCCAGTGT CGAGACCGAC ATCATCCTCA CCGAGGACGA CATCCCGGTC GACAGCAAAG GCAAGGGCCG CCAGTGCTTC ATCAAGACCG AGTTCGCGCT GCGCAATCAG GAGCATGCAC TGGACGTTCT GCTGCTGGAG GAACCAGAGA ACCACCTCAG CCACGTCCAC ATGCGCAAGC TTATCGAGCG CATCCGGGCC TCGGTGAAAA AGCAGCTCTT CGTCGCTACC CACAGCAGCT TCATCGCCAC GCGCCTGAAC CTGAAGAAGG TGCTGATTCT GAGCGAGGAG AACCCGTCGC GGCCGGCGAG CCTCAAGAAT CTAAGCCAAG GCACGGCCGA GTTCTTCATG AAGGCGCCGG ACAACAACGT GCTGGAACTG GCGCTGTGCA AGAAGGCGAT CCTGGTGGAG GGCGATGCCG AGTTCATCTT GATGGAAGCG CTCTACAAGC TCAGTGCGCC TGGGCACAGC CAAGACGCCG ATGGCGTCCA TGTAATCTCG GTCGACGGCA CCAGCTTCAA GCGCTACCTG GAGCTGGCGA AGCTGCTGGG CATCAAGGTG GCGGCCATCC GTGACAACGA CGGCGACTAC GCCGCCAACT GCGTGGCGAA CTACGCCGAC CATGTCTCGG CCTCCATCCA GGTCTTCGCC GACGTGGACA GCGCGCGGCA CACCTTCGAG GTCTGCATGT ACCGTGACAA CCAGGCGGTG TGCGACGAGT TGTTCGCACC GGGGCGCAAG AAGTTGAGCG TCGAGGACTA CATGCTGAAA AACAAAACCG AAGCTGCATT CCAGCTGCTG GAGAAGAAGG GAGCTCTGCT GGTCGTTCCG GGCTACATCC AGCAGGCGGT GGCATGGATA AGCGCGTAG
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Protein sequence | MVTIRRLVLK NFKRFRTLEL EFDGELNILV GGNEAGKSSV LQAMEIVLSA SRSKVESIGI EALFNADCIA EFLAGGRKVA DLPELLIEVY FDDLPGRHDL DGRNNSKGVD HLGIKMVCRP ADEYTREVQA ILAEKHDNFP FEYYGIHFQT FSDEAVFPHK KPLRHLLIDS SQINNEYATR EYTRAMYAAH ATVAQRNQHG FEYRKAKANF RDKAFKAMNE ALKDYKFDVR TSPKASVETD IILTEDDIPV DSKGKGRQCF IKTEFALRNQ EHALDVLLLE EPENHLSHVH MRKLIERIRA SVKKQLFVAT HSSFIATRLN LKKVLILSEE NPSRPASLKN LSQGTAEFFM KAPDNNVLEL ALCKKAILVE GDAEFILMEA LYKLSAPGHS QDADGVHVIS VDGTSFKRYL ELAKLLGIKV AAIRDNDGDY AANCVANYAD HVSASIQVFA DVDSARHTFE VCMYRDNQAV CDELFAPGRK KLSVEDYMLK NKTEAAFQLL EKKGALLVVP GYIQQAVAWI SA
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