Gene Lcho_1960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1960 
Symbol 
ID6161749 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2124287 
End bp2125855 
Gene Length1569 bp 
Protein Length522 aa 
Translation table11 
GC content60% 
IMG OID641664729 
Producthypothetical protein 
Protein accessionYP_001790992 
Protein GI171058643 
COG category[L] Replication, recombination and repair 
COG ID[COG3593] Predicted ATP-dependent endonuclease of the OLD family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGTAACAA TAAGACGATT GGTGCTTAAG AATTTCAAGC GCTTCAGGAC GCTGGAGCTG 
GAATTCGACG GTGAGCTGAA CATCCTGGTG GGCGGCAACG AGGCTGGCAA AAGTTCGGTG
CTGCAGGCGA TGGAAATCGT GCTCAGCGCC AGCCGCAGCA AGGTCGAGAG CATCGGAATC
GAAGCCCTGT TCAACGCCGA CTGCATTGCG GAGTTCTTGG CCGGTGGCCG CAAGGTCGCA
GACCTGCCCG AGCTATTGAT TGAAGTCTAT TTCGATGACC TGCCGGGGCG CCATGACCTA
GATGGCCGTA ACAATAGCAA AGGCGTCGAC CACCTAGGCA TCAAGATGGT GTGCCGGCCG
GCCGACGAGT ACACGCGGGA GGTCCAGGCG ATCCTGGCCG AGAAGCACGA CAACTTCCCG
TTCGAGTACT ACGGCATTCA CTTCCAGACG TTTTCCGACG AGGCGGTCTT TCCTCACAAG
AAGCCGCTGC GGCACCTGCT GATCGACAGC TCGCAGATCA ACAATGAGTA CGCCACGCGC
GAATACACGC GCGCCATGTA CGCCGCGCAT GCGACCGTCG CGCAGCGCAA CCAGCACGGC
TTCGAGTACC GCAAGGCCAA GGCAAACTTT AGGGATAAAG CCTTCAAGGC GATGAACGAA
GCGCTGAAGG ACTACAAGTT TGATGTCCGT ACGAGCCCCA AGGCCAGTGT CGAGACCGAC
ATCATCCTCA CCGAGGACGA CATCCCGGTC GACAGCAAAG GCAAGGGCCG CCAGTGCTTC
ATCAAGACCG AGTTCGCGCT GCGCAATCAG GAGCATGCAC TGGACGTTCT GCTGCTGGAG
GAACCAGAGA ACCACCTCAG CCACGTCCAC ATGCGCAAGC TTATCGAGCG CATCCGGGCC
TCGGTGAAAA AGCAGCTCTT CGTCGCTACC CACAGCAGCT TCATCGCCAC GCGCCTGAAC
CTGAAGAAGG TGCTGATTCT GAGCGAGGAG AACCCGTCGC GGCCGGCGAG CCTCAAGAAT
CTAAGCCAAG GCACGGCCGA GTTCTTCATG AAGGCGCCGG ACAACAACGT GCTGGAACTG
GCGCTGTGCA AGAAGGCGAT CCTGGTGGAG GGCGATGCCG AGTTCATCTT GATGGAAGCG
CTCTACAAGC TCAGTGCGCC TGGGCACAGC CAAGACGCCG ATGGCGTCCA TGTAATCTCG
GTCGACGGCA CCAGCTTCAA GCGCTACCTG GAGCTGGCGA AGCTGCTGGG CATCAAGGTG
GCGGCCATCC GTGACAACGA CGGCGACTAC GCCGCCAACT GCGTGGCGAA CTACGCCGAC
CATGTCTCGG CCTCCATCCA GGTCTTCGCC GACGTGGACA GCGCGCGGCA CACCTTCGAG
GTCTGCATGT ACCGTGACAA CCAGGCGGTG TGCGACGAGT TGTTCGCACC GGGGCGCAAG
AAGTTGAGCG TCGAGGACTA CATGCTGAAA AACAAAACCG AAGCTGCATT CCAGCTGCTG
GAGAAGAAGG GAGCTCTGCT GGTCGTTCCG GGCTACATCC AGCAGGCGGT GGCATGGATA
AGCGCGTAG
 
Protein sequence
MVTIRRLVLK NFKRFRTLEL EFDGELNILV GGNEAGKSSV LQAMEIVLSA SRSKVESIGI 
EALFNADCIA EFLAGGRKVA DLPELLIEVY FDDLPGRHDL DGRNNSKGVD HLGIKMVCRP
ADEYTREVQA ILAEKHDNFP FEYYGIHFQT FSDEAVFPHK KPLRHLLIDS SQINNEYATR
EYTRAMYAAH ATVAQRNQHG FEYRKAKANF RDKAFKAMNE ALKDYKFDVR TSPKASVETD
IILTEDDIPV DSKGKGRQCF IKTEFALRNQ EHALDVLLLE EPENHLSHVH MRKLIERIRA
SVKKQLFVAT HSSFIATRLN LKKVLILSEE NPSRPASLKN LSQGTAEFFM KAPDNNVLEL
ALCKKAILVE GDAEFILMEA LYKLSAPGHS QDADGVHVIS VDGTSFKRYL ELAKLLGIKV
AAIRDNDGDY AANCVANYAD HVSASIQVFA DVDSARHTFE VCMYRDNQAV CDELFAPGRK
KLSVEDYMLK NKTEAAFQLL EKKGALLVVP GYIQQAVAWI SA