| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1952 |
|---|
| Symbol | |
|---|
| ID | 6162034 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 2115073 |
|---|
| End bp | 2116356 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641664721 |
|---|
| Product | phosphoribosylamine--glycine ligase |
|---|
| Protein accession | YP_001790984 |
|---|
| Protein GI | 171058635 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0151] Phosphoribosylamine-glycine ligase |
|---|
| TIGRFAM ID | [TIGR00877] phosphoribosylamine--glycine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTCA TGGTGATCGG GAGCGGTGGG CGTGAGCACG CCATCGCCTG GAAACTGGCG
CAGTCGCCCA AGGTGCAGAA GGTGTTCGTG GCGCCCGGCA ACGGCGGCAC GGCGCGCCAC
GGCCAGATCG TCAACATGCC GCTGACCGGC GTGAGCGAGC TGGCCGACTT CGCACAAAGC
GAGAAGATCG GCCTGACCGT GGTCGGCCCC GAAGGCCCGC TGGCCGCGGG TGTGGTCGAC
GAGTTCCGCC GCCGCGGCCT GCGCATCTTC GGCCCCACGC AGGCGGCCGC GCAGCTCGAG
AGCTCGAAGG CCTTCTCGAA GGACTTCATG CGACGCCACG GCATCCCGAC CGCGGCCTAC
GAGACCTTCA GCGATGTCGC CGCCGCGCAC GCCTATGTCG ACCGCCTCGG CGCGCCGATC
GTGGTCAAGG CCGACGGCCT GGCCGCGGGC AAGGGCGTGG TCGTGGCGAC GACGCTCGAA
GAGGCGCACC AGGCGGTCGA CTGGATGCTG CTCGACAACA GCCTGGGCGT GACGCACAAC
GCCGGCGGCG CGCGGGTGGT GATCGAGGAG TTCCTCGACG GCGAGGAAGC GAGCTTCATC
GTCATGGTCG ACGGCCGCAA CATCCTGCCG CTGGCCACCA GCCAGGACCA CAAGCGCGTC
GGCGACGGCG ACACCGGCCC CAACACCGGC GGCATGGGCG CGTACTCGCC CGCCCCGGTG
GTGACGCCCA ACGTGCACGC GAGGGTGATG CACGAGATCA TCCAGCCCAC CGTCGACGGC
ATGGCGCGTG ACGGCATCCC GTTCACCGGC TTCCTGTACG CCGGCCTGAT GATCGATGCC
CGCGGCCACG CCAAGACGCT GGAGTTCAAC ACCCGGCTCG GCGATCCGGA AACCCAGCCG
ATCCTGATGC GACTGAAGAG CGACCTGGTC GACGTGTTCA TGCACGCCAC CAGCGGCACG
CTCGACCAGG TGCAGCTCGA CTGGGACCGC CGGGTCGCGC TCGGCGTGGT GCTGGCTGCG
GCCGGTTATC CGCAGTCGCC GCGCAAGGGC GACACGATCC GCGGCCTGCC GGCCGAAACG
GAAGACTGCA TGGTCTTCCA CGCCGGCACC ACCACCGGCC CGACCGGCGA GGTGCTGACC
AGCGGCGGCC GCGTGCTGTG CGTCACCGCG CTCGGCGATT CGGTGCGCAC CGCGCAGCAG
CGCGCCTACC AGGGCGCGCA CGGGATCCAG TTCGACGGCA TGCACTACCG CCACGACATC
GGCTACCGCG CCATCAAGCG CTGA
|
|---|
| Protein sequence | MKVMVIGSGG REHAIAWKLA QSPKVQKVFV APGNGGTARH GQIVNMPLTG VSELADFAQS
EKIGLTVVGP EGPLAAGVVD EFRRRGLRIF GPTQAAAQLE SSKAFSKDFM RRHGIPTAAY
ETFSDVAAAH AYVDRLGAPI VVKADGLAAG KGVVVATTLE EAHQAVDWML LDNSLGVTHN
AGGARVVIEE FLDGEEASFI VMVDGRNILP LATSQDHKRV GDGDTGPNTG GMGAYSPAPV
VTPNVHARVM HEIIQPTVDG MARDGIPFTG FLYAGLMIDA RGHAKTLEFN TRLGDPETQP
ILMRLKSDLV DVFMHATSGT LDQVQLDWDR RVALGVVLAA AGYPQSPRKG DTIRGLPAET
EDCMVFHAGT TTGPTGEVLT SGGRVLCVTA LGDSVRTAQQ RAYQGAHGIQ FDGMHYRHDI
GYRAIKR
|
|---|
| |