Gene Lcho_1931 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1931 
Symbol 
ID6160436 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp2093798 
End bp2094364 
Gene Length567 bp 
Protein Length188 aa 
Translation table11 
GC content64% 
IMG OID641664697 
ProductCDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 
Protein accessionYP_001790963 
Protein GI171058614 
COG category[I] Lipid transport and metabolism 
COG ID[COG0558] Phosphatidylglycerophosphate synthase 
TIGRFAM ID[TIGR00560] CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.0315162 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTATGA CCCTACCGAC GTTGTTGACC TGGGCCCGGA TCGTGGCGAT TCCACTGATC 
GTCGGCATCT TCTACCTGCC GCTGGACACG CCCACGCGCA ATCTCACGGC CTCGGTGCTG 
TTCGTGGCGG TGGCGCTGAC CGACTGGCTC GACGGCTACC TGGCGCGCCG GCTCAACCAG 
ACCTCGGCCT TCGGCGCCTT TCTCGATCCG GTGGCCGACA AGATCCTGGT CTGCGCGACC 
TTGCTGATCC TGCTGCAGCT CGGCCGCGTC GACGTGTTCA TCGCGCTGGT GATCATCGGC 
CGAGAAATCA CCATCTCGGC GCTGCGCGAG TGGATGGCGC AGATCGGCGC CTCGCGCAGC 
GTGGCGGTGC ACATGCTGGG CAAGCTCAAG ACGGCCGCGC AGATGACCGC CATCCCGTTC 
CTGCTGTTCG ACGGCAAGCT GTTCGGCGTG ATCGACACGC ACTTCTGGGG CACGATCCTG 
ATCATCGCGG CGAGCCTGCT GACGATCTGG TCGATGGTCT ATTACATGAA GAAGGCGGTG 
CCCGAGATCC GCGCCAAAGT GCGCTGA
 
Protein sequence
MFMTLPTLLT WARIVAIPLI VGIFYLPLDT PTRNLTASVL FVAVALTDWL DGYLARRLNQ 
TSAFGAFLDP VADKILVCAT LLILLQLGRV DVFIALVIIG REITISALRE WMAQIGASRS 
VAVHMLGKLK TAAQMTAIPF LLFDGKLFGV IDTHFWGTIL IIAASLLTIW SMVYYMKKAV 
PEIRAKVR