| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1928 |
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| Symbol | |
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| ID | 6160197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2090156 |
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| End bp | 2092069 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641664693 |
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| Product | PpiC-type peptidyl-prolyl cis-trans isomerase |
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| Protein accession | YP_001790960 |
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| Protein GI | 171058611 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0492911 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGATT TTGTCCGTCG CCACAACCGC CTGCTGCAAT TCGGCCTGGC CTTGGTGATC
GTTCCGTCGT TCCTTGTCGT CGGGATTCAG GGTTACGACC AGTTCAGCGC AAGCAACGAA
GCGGTCGCCA ACATCGACGG CCGCGCCATC ACGCAGACCG AATGGGACGC CGCACATCGC
CAGCAGGTCG AGCGCGTGCG TGCGCAGATG CCCGGCGTCG ATGCCAAGCT GCTCGACAGC
CCGGCGATCA AGCAGAAGGT GCTCGACGAC CTGGTGCGTG AGCGGGTGAT GCTCGTGGCC
GCCCAGAAGC TGCTGCTGGC ACCGACCGAC CAGCGTCTGC AGCGCCTGTT CGCCACGGAT
CCGCAGTTTG CGAGCCTGCG CAACGCCGAC GGCTCGGTGC GCAAGGATCT GCTCGAAGCG
CGCGGCATGA CCTCCGAACA GTTCGCCCAG CAGTTGCGCC AGGAGTTCGC CCTGCGCCAG
GTTTCTCTCG GCCTGGCCGG CTCCGCGCTG GCATCGCCCG CGGTGACCGC GCGTGCGATG
GACTCGTTCT TCCAGCAGCG CGAGGTGCAG GTCGCGCTGT TCCCGGCCAA GGACTATCTG
TCGAAGGTTT CGGCTTCGGA TGCCGAGCAG CAGGCCTATT ACGACGACCC CAGGAATGCC
GCGCAATTCC AGTCGCCGGA AACGGTATCG GTCGAGTATG TGGTGCTCGA CCTGCCGGCC
GTGACGGCAG GCATCAACGT CAACGAAGAC GATCTGCGCA AGTACTACGA CGAAAATGCG
GCGCGCTACG AACAGCCGCA GGAACGGCGT GCCCGCCACA TCCTCGTCAA GCTCGACGCG
GATGCCTCCG ACGACGCCAA GGCAAAAGCC AGGGAAAAGG CCGCGGCGCT GCTGGCCGAG
GTGCAGAAGA ACCGCGCCGC CTTTGCCGAT CTGGCCCGCA GACAATCCGA CGACCCCGGC
TCTGCCGCAC AAGGCGGCGA CCTCGACTGG ATCGCTCGTG GCGCGATGGT CAAGCCGTTC
GAGGACGCCG TCTTCGGGCT CAAGAAGGGT GAGCTCGGCG GCATCGTCGA AACCGAATTC
GGCCTTCACG TCATCGAGGT GACCGACACC CGCGGTGGTG AAAAACGCGC CTTTGCCAAC
GTGCGCGGCG AACTCGAGGC CGAAGTCAGG AAACAGCTCG CTCAGAAGCG TTACGCCGAA
CTGGCCGAGC AGTTCACCAA CCTGGTCGAA CAGGAAGACA CGCTCAAGCC GGTGGCCGAT
GCGCTCAAGC TCGAACTGCA CAAGGCCGAC AAGCTCGGCC GCGTCGCGCC TGCGCAACCG
GGCAATGTGC TTGCGTCGCC CAAGGTGCTG GAAGCGATCT TCCAGCCCGA ATCGCTGAGC
GGCAAGCGCA ACATCGAGCC GGTCGAGGCG GCCGCCAACC AGCTCGTCGC GGCTCGCGTG
CTCGAACATG CGCCTGCGCG CAAGCAACCG CTGGCCGAAG TCGGCGAACG GCTGCGCAAC
GCGGTGATCA GCGAGAAGGC GGCCAAGGCC GCTGCGGACG ACGGCAAGAC CAAGCTGGCC
GAGTGGCAAT CCAAGCCCGA AAGCGCCAAG CTCGGCGCGG CCCTGGTGCT ATCGCGGACG
CAGGCCCAAG GTCAGCCACG CGAAGTGGTG GACGCCGTTC TGCGCGCACC CGCCGACAAG
CTGCCGGGCT GGATCGGCGT CGAACTGGGT GGACAGGGTT ATGCCGTGAT CAAGCTGGCG
AAGGTGCTGG CCGCCGACCC GGCCGCGACC GGGGATCCGG AGCGCGTCAA GGCCCAATAC
GCACAACTGT GGTCGCAAGC GGAATCCGAC GCCTACTACC GCGCCCTGAG CAAGCGATAC
AAGGCCGAGG TCACCGACAA GGGCAAGGCC GCGGTCGGAA CCGCCACTCC TTGA
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| Protein sequence | MFDFVRRHNR LLQFGLALVI VPSFLVVGIQ GYDQFSASNE AVANIDGRAI TQTEWDAAHR
QQVERVRAQM PGVDAKLLDS PAIKQKVLDD LVRERVMLVA AQKLLLAPTD QRLQRLFATD
PQFASLRNAD GSVRKDLLEA RGMTSEQFAQ QLRQEFALRQ VSLGLAGSAL ASPAVTARAM
DSFFQQREVQ VALFPAKDYL SKVSASDAEQ QAYYDDPRNA AQFQSPETVS VEYVVLDLPA
VTAGINVNED DLRKYYDENA ARYEQPQERR ARHILVKLDA DASDDAKAKA REKAAALLAE
VQKNRAAFAD LARRQSDDPG SAAQGGDLDW IARGAMVKPF EDAVFGLKKG ELGGIVETEF
GLHVIEVTDT RGGEKRAFAN VRGELEAEVR KQLAQKRYAE LAEQFTNLVE QEDTLKPVAD
ALKLELHKAD KLGRVAPAQP GNVLASPKVL EAIFQPESLS GKRNIEPVEA AANQLVAARV
LEHAPARKQP LAEVGERLRN AVISEKAAKA AADDGKTKLA EWQSKPESAK LGAALVLSRT
QAQGQPREVV DAVLRAPADK LPGWIGVELG GQGYAVIKLA KVLAADPAAT GDPERVKAQY
AQLWSQAESD AYYRALSKRY KAEVTDKGKA AVGTATP
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