Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1926 |
Symbol | |
ID | 6159766 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2088190 |
End bp | 2088957 |
Gene Length | 768 bp |
Protein Length | 255 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641664690 |
Product | ABC-2 type transporter |
Protein accession | YP_001790958 |
Protein GI | 171058609 |
COG category | [S] Function unknown |
COG ID | [COG1511] Predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.14437 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCATCA ACATCCACGC GATCCGCGCC ATCTACCGTT TCGAGATGGC ACGCACCTGG CGCACGCTGA TGCAGAGCGT GATCTCGCCG GTGATCTCGA CCTCGCTGTA CTTCGTGGTC TTCGGCGCGG CGATCGGCTC GCGCATCCCC GAGGTCGGCG GCATCAGCTA CGGCGCCTTC ATCGTGCCGG GCCTGATCAT GCTGTCGCTG CTGACGCAGA GCGTCTCGAA CGCCTCGTTC GGCATCTATT TCCCCAAGTT CAGCGGCACG ATCTACGAGC TGCTGTCGGC GCCGATCTCC TACCTCGAGA TCGTCATCAG CTATGTCGGC GCAGCGGCCA GCAAGTCGAT CCTGCTGGGG CTGATCATCC TGGCGACGGC CCGCCTGTTC GTGCCGTTCG AGGTGGCCCA TCCGGTCTGG ATGCTGCTGT TCCTGGTGCT GACCGCGGTG ACCTTCAGCC TGATCGGCTT CATCATCGGC ATCTGGGCCG ACAGCTTCGA GAAGCTGCAG GTCGTGCCGC TGCTGGTGAT CACGCCGCTG ACCTTTCTGG GTGGCAGCTT CTACTCGATC GACATGCTGC CGCCGTTCTG GCAGACGGTG GCGCTGTTCA ATCCGGTGGT CTACCTGGTG AGCGGCTTCC GCTGGAGCTT CTACGGCCTG GCCGACGTGG GCGTGGGCTT GAGCCTGGCC ATGACGATGG CCTTTCTGGT CGCTGCACTG GCGGTCGTGG CCTGGATCTT CAAGACCGGC TACAAGCTCA AGGTGTAG
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Protein sequence | MSINIHAIRA IYRFEMARTW RTLMQSVISP VISTSLYFVV FGAAIGSRIP EVGGISYGAF IVPGLIMLSL LTQSVSNASF GIYFPKFSGT IYELLSAPIS YLEIVISYVG AAASKSILLG LIILATARLF VPFEVAHPVW MLLFLVLTAV TFSLIGFIIG IWADSFEKLQ VVPLLVITPL TFLGGSFYSI DMLPPFWQTV ALFNPVVYLV SGFRWSFYGL ADVGVGLSLA MTMAFLVAAL AVVAWIFKTG YKLKV
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