Gene Lcho_1926 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1926 
Symbol 
ID6159766 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2088190 
End bp2088957 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content63% 
IMG OID641664690 
ProductABC-2 type transporter 
Protein accessionYP_001790958 
Protein GI171058609 
COG category[S] Function unknown 
COG ID[COG1511] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.14437 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCATCA ACATCCACGC GATCCGCGCC ATCTACCGTT TCGAGATGGC ACGCACCTGG 
CGCACGCTGA TGCAGAGCGT GATCTCGCCG GTGATCTCGA CCTCGCTGTA CTTCGTGGTC
TTCGGCGCGG CGATCGGCTC GCGCATCCCC GAGGTCGGCG GCATCAGCTA CGGCGCCTTC
ATCGTGCCGG GCCTGATCAT GCTGTCGCTG CTGACGCAGA GCGTCTCGAA CGCCTCGTTC
GGCATCTATT TCCCCAAGTT CAGCGGCACG ATCTACGAGC TGCTGTCGGC GCCGATCTCC
TACCTCGAGA TCGTCATCAG CTATGTCGGC GCAGCGGCCA GCAAGTCGAT CCTGCTGGGG
CTGATCATCC TGGCGACGGC CCGCCTGTTC GTGCCGTTCG AGGTGGCCCA TCCGGTCTGG
ATGCTGCTGT TCCTGGTGCT GACCGCGGTG ACCTTCAGCC TGATCGGCTT CATCATCGGC
ATCTGGGCCG ACAGCTTCGA GAAGCTGCAG GTCGTGCCGC TGCTGGTGAT CACGCCGCTG
ACCTTTCTGG GTGGCAGCTT CTACTCGATC GACATGCTGC CGCCGTTCTG GCAGACGGTG
GCGCTGTTCA ATCCGGTGGT CTACCTGGTG AGCGGCTTCC GCTGGAGCTT CTACGGCCTG
GCCGACGTGG GCGTGGGCTT GAGCCTGGCC ATGACGATGG CCTTTCTGGT CGCTGCACTG
GCGGTCGTGG CCTGGATCTT CAAGACCGGC TACAAGCTCA AGGTGTAG
 
Protein sequence
MSINIHAIRA IYRFEMARTW RTLMQSVISP VISTSLYFVV FGAAIGSRIP EVGGISYGAF 
IVPGLIMLSL LTQSVSNASF GIYFPKFSGT IYELLSAPIS YLEIVISYVG AAASKSILLG
LIILATARLF VPFEVAHPVW MLLFLVLTAV TFSLIGFIIG IWADSFEKLQ VVPLLVITPL
TFLGGSFYSI DMLPPFWQTV ALFNPVVYLV SGFRWSFYGL ADVGVGLSLA MTMAFLVAAL
AVVAWIFKTG YKLKV