| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1899 |
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| Symbol | |
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| ID | 6159833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2055348 |
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| End bp | 2057624 |
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| Gene Length | 2277 bp |
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| Protein Length | 758 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641664661 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_001790931 |
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| Protein GI | 171058582 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.0360042 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACGA CGCGCCTCGA CGTCGGGGCC GAGTCGGCTT CGCCGATCCT GCAACTGGCC
GATGCGGTCG GCACGGCCGG CCAGCCCGAC GCCGGCCAGG AAACCGAGCG GCTCGAGCGG
GCCCGTGCCT TTGCCGTGCC CTTGCTGAGC GGGCACCGGT TCGACACCGG TGAAGACGCG
CTCGAACACG CGGACGGCGT GGCGCAGATC CTCAAGAGCG TGGGTGCCGC GCCGTCGATG
CAGGCGGCGG TCTACCTGGT CTACGCCGGC GATTTCCTGA CCGACCCCGA GACGGTGGTC
AGCCAGGCTT TCGGCCCGTC GTACGCGAGC CTGGTGACGC ACACGCGCAA GCTGGTGAAG
CTGCAGCGCA GCGCGCGCGA TGCCTTGCTC GAGGAAACCG ACCAGGAGGT GCTGGCCGAG
CAGCTCGAGC GCGTGCGCAA GATGCTGCTG GCGTTTTCAC ACGACCTGCG GGTGGTGCTG
CTGCGGTTGG CGTCGCGGCT GCAGACGCTG CGCTTCCACG CGGCCAGCCG CACGCCGTGC
CCGCGGGCCT TGGCGCGCGA GAGCCAGCAG GTGTTCGCGC CACTGGCCAA CCGGCTCGGC
ATCTGGCAGA TCAAATGGGA GCTGGAGGAC CTGGCGTTCA GGTTCCTGCA GCCCGAGCAG
TACAAGCGGA TCGCCCGCCT GCTCGATGAA AAACGCGTCG AGCGCGAGAC CGGCATCGAG
CGTGCCCGCG AACACCTGGC ACAAGCCCTG GCGCAGGCGG GTGTGCAGGC GCAGGTACAG
GGCCGGCCCA AGCACATCTA CAGCATCTGG AAAAAGATGC AGGGCAAGAG CCTCGATTTC
TCGCGGGTCT TCGATGTGAG CGCGCTGCGG GTGATCGTCG CCGATGTGCG CGACTGCTAT
GCCGCGCTCA GCCGCGTGCA CGAGCTCTGG CATGCGCTGC CCGACGAGTT CGACGACTAC
ATCGCCCGGC CCAAGGCCAA CGGCTACCAG TCGCTGCATA CGGTGGTGCT CGACGACGAG
CAGCGCCCGT TCGAGATCCA GATCCGCACC CGCGAGATGC ACGAACACGC CGAGAGCGGC
GTGGCCGCGC ACTGGGCCTA CAAGGAGGCC GGCAGCAAGG GTTACGCCGG TGTCAGCGCA
GCGGGCGACT TCGAGGATCG CGTGGCCCTG GCGCGCCGTG CGGTGCTGCA TCAGCTGCTG
GCCTGGGAGC GCGATTTCGC CGGCCAGAGC GCGGCCCAGG CCGCCGGGCT GGGCGGGCAG
GGCGCAGGCG CCGGGTTCTT CGAGGACCGC ATCTACGTGC TCACGCCGCA GGGCAGCGTG
ATCGAGTTGC CGGCCGGGGC CACGGCGATC GACTTCGCCT ACCAGCTGCA CACCGACCTC
GGCCACCGCT GCCGGGGCGC GCGTGTCGAC GGGGCGCTGG TGCCGCTGAT CACGCCGCTC
AAGAGCGGAC AGACGGTGGA GATCGTCGCC GCCAAGGAGG GCGGGCCGTC GCTCGACTGG
CTCAACCCGC AGCTCGGTTA TCTGCAGAGC CACCGCGCGC GGGCCAAGGC GCGCGCCTGG
TTCAATGCCC GTGCCTTGCA GGACACCGTC GCACGCGGGC GCGAGGCGGT CGACAAGCTG
CTGCAGCGCG AAGGCCGCAC GGCCATCAAG CTCGACGAGC TGGCCACGCA GCTGGGTTTC
CGTCATGCCG AGGCGCTGTT CGAGGTGGTC GGCAAGGACG AGTATTCGTT GCGCAACATC
GAGCTGCAGC TGCGCCCGCC CGAGCCGGTG GTCGAAGACG ACACGCCGGT GTTCAAGCGG
TCACGCAGCC ATGCCGGCGG CGGCAATGGC GTGCTGGTGG TCGGTGTCGG ATCGCTGCTC
ACGCAACTGG CGCATTGCTG CCGGCCGGCG CCGCCCGACG TGATCGGTGG GTTCGTCACC
CGCAGCAAGG GCGTGGCGGT TCACCGCAAG GACTGCCTGA ACTTTCGCGA GATGGTGGCG
CGCCACCCCG AGCGTGCGAT CCCTGTCACC TGGGGCAGCC AGGGCGCTTC TGACGGACGC
AATGCGGTCT ACCCGGTCAA CGTCTCGGTG ACGGCCGTCG ACCGGCAAGG CCTGCTGCGC
GACATCTCGG AGGTGTTCGC CAAGGAGAAG ATGAACGTCA CCGGCGTGCA CACCCGCTCG
GTCAAGGGCA CGGCCTGGAT GACCTTCACA GTCGAGGTGG CCGACTCGGC GCTGCTGGCT
CACGTGCTGA GCCTGGTCGC ATCGGTGAAC GGCGTGCGGA GCGCACAGCG CCGTTGA
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| Protein sequence | MKTTRLDVGA ESASPILQLA DAVGTAGQPD AGQETERLER ARAFAVPLLS GHRFDTGEDA
LEHADGVAQI LKSVGAAPSM QAAVYLVYAG DFLTDPETVV SQAFGPSYAS LVTHTRKLVK
LQRSARDALL EETDQEVLAE QLERVRKMLL AFSHDLRVVL LRLASRLQTL RFHAASRTPC
PRALARESQQ VFAPLANRLG IWQIKWELED LAFRFLQPEQ YKRIARLLDE KRVERETGIE
RAREHLAQAL AQAGVQAQVQ GRPKHIYSIW KKMQGKSLDF SRVFDVSALR VIVADVRDCY
AALSRVHELW HALPDEFDDY IARPKANGYQ SLHTVVLDDE QRPFEIQIRT REMHEHAESG
VAAHWAYKEA GSKGYAGVSA AGDFEDRVAL ARRAVLHQLL AWERDFAGQS AAQAAGLGGQ
GAGAGFFEDR IYVLTPQGSV IELPAGATAI DFAYQLHTDL GHRCRGARVD GALVPLITPL
KSGQTVEIVA AKEGGPSLDW LNPQLGYLQS HRARAKARAW FNARALQDTV ARGREAVDKL
LQREGRTAIK LDELATQLGF RHAEALFEVV GKDEYSLRNI ELQLRPPEPV VEDDTPVFKR
SRSHAGGGNG VLVVGVGSLL TQLAHCCRPA PPDVIGGFVT RSKGVAVHRK DCLNFREMVA
RHPERAIPVT WGSQGASDGR NAVYPVNVSV TAVDRQGLLR DISEVFAKEK MNVTGVHTRS
VKGTAWMTFT VEVADSALLA HVLSLVASVN GVRSAQRR
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