Gene Lcho_1878 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1878 
Symbol 
ID6160378 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp2030139 
End bp2030819 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content73% 
IMG OID641664640 
ProductdTMP kinase 
Protein accessionYP_001790910 
Protein GI171058561 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0125] Thymidylate kinase 
TIGRFAM ID[TIGR00041] thymidylate kinase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.04271 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGATCGCCG CCTTGAGCAC TGAACACAAC CCCTCTCGGC CGCCCCGGGC CGAGGCCGCA 
TCGCACCCGC CGGCCGGCTG CTTCGTCACC ATCGAGGGCA TCGACGGCGC CGGCAAGACC 
AGCCATGTCC AGGCCATTGC CGAGCGCTGG CGCGCGCGGG GCCTCGAGGT GGTGCGCACC 
CGCGAGCCCG GCGGCACGCC GCTGGCCGAA GCACTGCGCG AACTGGTGCT GCACCAGCCG 
ATGGACGCGC TGACCGAGGC GCTGCTGGTG TTCGCGGCGC GCCGCAATCA TCTGCAGGAG 
GTCATCGAGC CGGCGCTGGC GCGCGGTGCG GTGGTGCTGT GCGACCGCTT CACCGACGCG 
ACGTTCGCCT ACCAGGGCGG GGGGCGCGGT TTCGACACGG CGGTGCTGGC GCAACTGGAG 
ACCTGGGTGC AGGGCAGTCG CCAGCCCGAT CTGACGCTGT GGTTCGACCT CGGCCCCGAG 
CTGGCTGCCG AGCGCCGTGC CGCGGCACGT GCACCCGACC GCTTCGAGCG CGAGCAGGTG 
GCTTTTTTCC ATGCCGTGCG CCTGGCTTAC GCCGACCGCC TGGCGCAGGC GCCGCAGCGC 
GTGCAGCGCA TCGACGCGGG CGGCACGCCG GAGCAGGTCG CCGCACGCTG GCTGGCGGTG 
CTGGAGTCGC GCGGATGGTG A
 
Protein sequence
MIAALSTEHN PSRPPRAEAA SHPPAGCFVT IEGIDGAGKT SHVQAIAERW RARGLEVVRT 
REPGGTPLAE ALRELVLHQP MDALTEALLV FAARRNHLQE VIEPALARGA VVLCDRFTDA 
TFAYQGGGRG FDTAVLAQLE TWVQGSRQPD LTLWFDLGPE LAAERRAAAR APDRFEREQV 
AFFHAVRLAY ADRLAQAPQR VQRIDAGGTP EQVAARWLAV LESRGW